Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5363g00001 ATGTCAAATCCCATGCTCATTGGGCAGGTCAAAGGGTATATAAATTATCTGCAGATCTTTTACTGCAGCTTTGGGCATTCCCCATTTTTGGGTCATGCCCTGCTTATACTGTGGCTTGTGATTTTGTTTTATCTTTTGGGAGATACAGCTTCAAATTACTTTTGTAGTAACCTGGAAGGTCTGTCTAATATCTTGAGACTATCCCCTACCATAGCTGGGGTAACCTTGCTTTCTCTCGGAAATGGTGCACCTGATTTTTTTGCCAGTGTTGTTTCTTTCACAAGATCCAATGACGGTGCAGTTGGCCTGAATAGCATTCTGGGAGGGGCGTTTTTTGTGTCCAGTGCTGTTTTGGGGATCATAAGTTTTCTTGTTGGTGCAAATGAAACTGCAATTGACAAGGCTAGTTTCATCAGAGATGTCATTTTCTTCCTTTTCGCACTTTTCATTCTCCTTGTCATCATTTCTATCGGTAAAATCAGCTTGTTGGGTTCAATTTTTTATGTTTCCATTTACTTCCTGTATGTGTGTGCTGTGTCTGCAACACATTTCATCTATGGAGGGGACAGGACAGAAAGGGAACTTGGCTCATCTTCTGATGACTTGACTGAGTCAGGCGTACCATTGCTAGGCTGTGTTGATGATGAGAAACCAAATGGATCAAACAAAGAGGTAATGGAAGATCAAGGGGAGAAGCATCATCAGGGTTTTGGTAATAATTCTTTTGACTTTACTTACTTGAGCAAGTTTCTACATGTACTAGAGCTACCTCTTTGCTTGCCAAGAAGGCTTACTATACCAGTTGTGAGTGAGGAAGGTTGGTCAAAGCCATATGCTGTTATATCTGTCACATTGGCACCTGTGTTATTTTCAGCTCTTTGTAACACCCAAATGGAAAATGAGAGTTCAAGGAGTAGTCTTGTTTCATACTTGACAGCTGCTTTGATTGGCATTGTTTTGGGTAACATGGCATGTGTGACAACCAAGAGCACTAGTCCACCCAGAAAATGCTTGTTTCCTTGGCTAGCTGGGGGATTTTCCATGAGTGTAACATGGACTTATATCATTGCTGAGGAACTTGTTTCCCTCTTGGTTGCACTTGGGAATGTGATAGGAGTTAGTCCTTCAATCCTTGGACTAACTGTCCTAGCTTGGGGTAATTCTCTAGGAGATTTGATAGCCAATGGTGCAATGGCCAAGAATGGAGGAGCTGATGGGGCCCAAATAGCTGTCTCTGGTTGTTATGCAGGCCCTATGTTTAACATTTTGATGGGCTTGGGCTTACCTCTTCTACTCTCAGCATGGTCTGAATACCCAGAGTCTTATGTGATTCCCAAGGACCCTTCTCTTTTTGCAACACTTTTGTTCTTGATGGGAGGGGTGCTTTGGGCCCTTGTGATATTGACAAAGAAGAATATGAAGCTTGATAAGTCATTGGGAATTGGGCTCTTGACCATTTACCTCTGCTTTTTGTTTATAAGGATGGTCATTGCAATTGGTGTTATTAAATTCTAG 1515 0.4205 MSNPMLIGQVKGYINYLQIFYCSFGHSPFLGHALLILWLVILFYLLGDTASNYFCSNLEGLSNILRLSPTIAGVTLLSLGNGAPDFFASVVSFTRSNDGAVGLNSILGGAFFVSSAVLGIISFLVGANETAIDKASFIRDVIFFLFALFILLVIISIGKISLLGSIFYVSIYFLYVCAVSATHFIYGGDRTERELGSSSDDLTESGVPLLGCVDDEKPNGSNKEVMEDQGEKHHQGFGNNSFDFTYLSKFLHVLELPLCLPRRLTIPVVSEEGWSKPYAVISVTLAPVLFSALCNTQMENESSRSSLVSYLTAALIGIVLGNMACVTTKSTSPPRKCLFPWLAGGFSMSVTWTYIIAEELVSLLVALGNVIGVSPSILGLTVLAWGNSLGDLIANGAMAKNGGADGAQIAVSGCYAGPMFNILMGLGLPLLLSAWSEYPESYVIPKDPSLFATLLFLMGGVLWALVILTKKNMKLDKSLGIGLLTIYLCFLFIRMVIAIGVIKF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5363g00001 504 Pfam Sodium/calcium exchanger protein 342 495 IPR004837 GO:0016020|GO:0055085
Vium5363g00001 504 Pfam Sodium/calcium exchanger protein 37 178 IPR004837 GO:0016020|GO:0055085
Vium5363g00001 504 Gene3D - 279 497 IPR044880 -
Vium5363g00001 504 Gene3D - 67 198 IPR044880 -
Vium5363g00001 504 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 11 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5363g00001 Vium-Chr5363 3453 5423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5363g00001 11 503 Antiporters AT5G17860 53.908 2.01e-173 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5363g00001 K13754 - gmx:100818583 839.721