Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium535g00009 ATGAACTGGACCGTTGATCCCGCGCTCTTCGCTTTTCTTTTTCCCTCTCTATGGGAGATCAAAGTCGCCGTCGCCGCCGCTGTCTTCGTCATAATCGCCTATCGCTTCTTCGCCGCCCGAACCGGACACTTCCACGCCGATCCGTCGCTTCCCGACAATTCCGCCACAGTCGATGTCGCCGACGATAAGGACAAGATGGAGCAGCCTAAAGTGGATTCTCAAGCCAGTTCAGCGTACTTGATCAAGTTAGAACTATTGGCTGCTAAGAATCTTGTTGGTGCAAATTTAAATGGCACATCGGATCCTTATGCTATCATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAACCCAATGTGGGGTGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCGGTTGAAAGTGAAGGTCAGACTGGGGCAGTGTGGCATACTTTGGATAGTCCATCAGGGCAGGTTTGTCTTCATATAAAAACAATAAAACTATCTGGAAATTCTTCCAGGATAAATGGATATGGAGGAGCCAACCCCCGAAGAAGGATCCCACCCTTGGAAAGACAGGGGCCCACTGTAGTCCATCAAAAGCCAGGGCCTCTTCAGACAATATTTTCTCTTCATCCAGACGAGGTTGTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTTTTGTACCATGGTCGTATGTATGTCTCAGCATGGCACATTTGTTTTCACTCCAATGTGTTCTCAAAGCAAATGAAGGTGCGTATTCCATTTGAAGATATAGATGAGATTCGACGGAGCCAACATGCATTTATTAATCCTGCTATAACAATTATACTTCGCATGGGTGCTGGTGGACATGGTGTCCCTCCTTTGGGAAGCCCTGATGGTAGGGTCAGATATATGTTCGCATCCTTTTGGAACAGGAATCATGCATTCAGAAATCTCCAGCGTGCTGCGAAGAATTTCCATGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAGCAGCGTGCACATAGCAGTTCTGTAAGAGGCAATAAACTGTTGGATAAGGCTCCTGTAGAAAGCATATCAAAAACTGGAAAACTTCCACATTTTATCAAAGAAGAGGCGTTAGTTGGTATATACAATGATGTTTTTCCCTGCACAGCAGAGCAGTTTTTTAACTTATTGTTGAATGACGGCTCAAATTTTACTAGCAAATATCGTTCAGTACGAAAGGACACTAATCTTGTGATGGGCCAGTGGCATACAGCAGACGAATATGATGGTCAAGTCCGAGAGATAACCTTCAGATCACTTTGTAACAGCCCTATGTGCCCTCCAGATACAGCCATGACAGAGTGGCAACATCATGTTCTAACACCAGACAAGAAAAACCTGGTGTTTGAGACTGTGCAGGAGGCACATGATGTTCCATTTGGATCCTATTTTGAGGTACACTGTAAATGGAGCTTGGCGACAATTAATGAAAGCTCGTGTAATCTGGACATTAAAGTGGGTGCACATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAGTCGGGGGCAGTCAATGAGTACAAGAAAGAAGTTGAGGTCATGTTAGATGTTGCTCGATCGTTTATAAAATCAAATACTTCTAATGACGAGAACGATGAGGTCTCTTCGCCCCTTGCACTGACCCCGGGAAGCTGA 1767 0.442 MNWTVDPALFAFLFPSLWEIKVAVAAAVFVIIAYRFFAARTGHFHADPSLPDNSATVDVADDKDKMEQPKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTIKLSGNSSRINGYGGANPRRRIPPLERQGPTVVHQKPGPLQTIFSLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVRIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESEQRAHSSSVRGNKLLDKAPVESISKTGKLPHFIKEEALVGIYNDVFPCTAEQFFNLLLNDGSNFTSKYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLTPDKKNLVFETVQEAHDVPFGSYFEVHCKWSLATINESSCNLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVEVMLDVARSFIKSNTSNDENDEVSSPLALTPGS 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium535g00009 588 Pfam C2 domain 82 176 IPR000008 -
Vium535g00009 588 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 79 190 IPR035892 -
Vium535g00009 588 Gene3D - 229 348 IPR011993 -
Vium535g00009 588 FunFam BAG-associated GRAM protein 1 isoform X2 229 348 - -
Vium535g00009 588 CDD C2 81 177 - -
Vium535g00009 588 ProSiteProfiles VASt domain profile. 400 570 IPR031968 -
Vium535g00009 588 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 579 IPR044655 -
Vium535g00009 588 ProSiteProfiles C2 domain profile. 62 177 IPR000008 -
Vium535g00009 588 SMART C2_3c 80 176 IPR000008 -
Vium535g00009 588 PRINTS C2 domain signature 96 108 IPR000008 -
Vium535g00009 588 PRINTS C2 domain signature 141 149 IPR000008 -
Vium535g00009 588 PRINTS C2 domain signature 120 133 IPR000008 -
Vium535g00009 588 Pfam GRAM domain 231 299 IPR004182 -
Vium535g00009 588 Gene3D C2 domain 57 194 IPR035892 -
Vium535g00009 588 Pfam VAD1 Analog of StAR-related lipid transfer domain 404 549 IPR031968 -
Vium535g00009 588 Coils Coil 339 366 - -
Vium535g00009 588 SMART gram2001c 228 294 IPR004182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium535g00009 Vium-Chr535 54428 67707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium535g00009 67 165 C2H2 Transcription Factor Family AT4G21160 24.242 1.22e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium535g00009 - - gmx:100789923 1085.86