Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium535g00003 ATGAACTATAGTTGTGTGTCTGACAACTATGATACTCAAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAAAGGAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGAGAGGAAGGAGAAGATTGGGGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGTCAAATGAATACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCATATCTTGAAACTTCAGCAGCAGCCAAGATGCAGGGTATGGAAGCATGCAGCCTGAGGAGTAGAGGGTTATGCCTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATTAAAACTACAACTTCACCTAAATTGGAGAATGATGTGTCTCAATTTCTTTGA 501 0.4092 MNYSCVSDNYDTQREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKESNEYIGFLHKQVKLLSAPYLETSAAAKMQGMEACSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTTSPKLENDVSQFL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium535g00003 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 109 IPR036638 GO:0046983
Vium535g00003 166 CDD bHLH_AtbHLH_like 51 102 IPR045239 -
Vium535g00003 166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Vium535g00003 166 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 135 - -
Vium535g00003 166 FunFam Transcription factor bHLH113 family 44 120 - -
Vium535g00003 166 Gene3D - 42 116 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium535g00003 Vium-Chr535 8778 12593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium535g00003 23 158 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 53.797 6.60e-52 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium535g00003 - - vun:114178105 283.493