Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium535g00002 ATGATAGCCAGCTCTTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAAAGGAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGAGAGGAAGGAGAAGATTGGGGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGTCAAATGAATACATAGGATTCCTTCATAAACAACTGCTCAGTGCTCCATATCTTGAAACTTCAGCAGCAGCCAAGATGCAGGGTATGGAAGCATGCAGCCTGAGGAGTAGAGGGTTATGCCTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATTAAAACTACAACTTCACCTAAATTGGAGAATGATGTGTCTCAATTTCTTTGA 498 0.4137 MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKESNEYIGFLHKQLLSAPYLETSAAAKMQGMEACSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTTSPKLENDVSQFL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium535g00002 165 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 134 - -
Vium535g00002 165 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Vium535g00002 165 CDD bHLH_AtbHLH_like 52 99 IPR045239 -
Vium535g00002 165 Gene3D - 43 116 IPR036638 GO:0046983
Vium535g00002 165 FunFam Transcription factor bHLH113 family 45 119 - -
Vium535g00002 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 100 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium535g00002 Vium-Chr535 8381 12593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium535g00002 24 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 53.205 1.79e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium535g00002 - - vun:114178105 306.605