Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium535g00001 ATGATAGCCAGCTCTTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAAAGGAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGAGAGGAAGGAGAAGATTGGGGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGTCAAATGAATACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCATATCTTGAAACTTCAGCAGCAGCCAAGATGCAGGGTATGGAAGCATGCAGCCTGAGGAGTAGAGGGTTATGCCTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATTAAAACTACAACTTCACCTAAATTGGAGAATGATGTGTCTCAATTTCTTTGA 504 0.4127 MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKESNEYIGFLHKQVKLLSAPYLETSAAAKMQGMEACSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTTSPKLENDVSQFL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium535g00001 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 110 IPR036638 GO:0046983
Vium535g00001 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Vium535g00001 167 Gene3D - 43 117 IPR036638 GO:0046983
Vium535g00001 167 FunFam Transcription factor bHLH113 family 45 121 - -
Vium535g00001 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 136 - -
Vium535g00001 167 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium535g00001 Vium-Chr535 8339 12593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium535g00001 24 159 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 53.797 3.64e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium535g00001 - - vun:114178105 310.842