Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5357g00002 ATGGTTTTGAAGGTTTCTCTCATTATTGTTCTCCTTGTGACATGCTCCTGTGTCGTGGAAGCCTATTCTAGGAATCACGATCACCGTCACAACCAAAATGGATCTTCTATGGCTGCCATAAAGTTTCCTGATCATCCAAGCTTTAGTACTGTCTCTTCTTCTGGGGACACTGATTGCAGCCTCTCGAGTTCTGAGGAACTCGGGCATTCTGGGTCTACCATGACATCAGGTGAAGAAACTGATCAAAAGGGTGAGGCTTTTCCAGCTCCAAGACCGCACAAGCAATTGGTGAAACTCCACTTGAAACACAGGTCAGGGAGCGAAGATGCTGAGCCTAAACAATCTGTGGTTGATTCCACCGTGAGGGATTTGACCAGAATTCAGAACCTTCACAGAAGGGTCATAGAGAAGAAGAATCAAAACGCCATTTCAAGGCTGCAAAAGTCACAGAACCAACCAAAGCAGTCCTTCGAGCCTGTGGTTTCTCCGGGGGCTTCGCCGGCAAGTGGGGTTTCCGGGCAGCTTGTGGCAACTTTGGAATCTGGGGTGAGTCTTGGCTCTGGTGAGTACTTCATGGATGTGTTTGTGGGCACACCTCCTAAGCATTTCTCTCTGATACTTGATACTGGTAGTGACCTTAATTGGATCCAATGTGTTCCTTGCATTGCATGTTTTGAGCAAAGTGGTCCATATTATGACCCCAAAGATTCTAGTTCTTTTAGGAATATAAGCTGTCATGATCCACGGTGCCAACTGGTTTCATCCCCTGATCCACCTAGGCCTTGCAAAGGTGAGAATCAGAGCTGTCCCTACTTCTACTGGTATGGAGATGGTTCAAACACAACTGGGGATTTTGCAGTGGAAACCTTTACCGTTAATCTCACCACTCCTTCTGGGGGGTCAGAGCTGAAGCATGTGGAGAATGTGATGTTTGGATGCGGTCATTGGAATAGGGGTCTCTTTCATGGGGCAGCTGGTTTGCTAGGCTTGGGGAGAGGACCATTGTCATTTGCTTCTCAGATGCAATCTCTCTATGGCCACTCCTTTTCCTATTGTCTTGTGGATAGAAATAGCAATGCAAGTGTGAGCAGCAAATTGATTTTTGGTGAGGACAAGGAGCTGCTCAGCCACCCCAATTTGAATTTCACTTCTTTTGCTGGTGCAAAAGAGGATTCAGTTGACACATTTTACTATCTCCAGATAAAGTCTGTTATGGTTGATGGTGAGGAGTTGAAGATACCTGAGGAAACTTGGCATTTGTCAGCAGAAGGTGCTGGTGGTACCATAATTGATTCTGGCACCACATTAACATATTTTGCTGAACCTGCTTATGAGATTATCAGGGAAGCTTTTGTGAAGAAGATTAAGGGCTATGCACTCATTGAAGGCCTTCCTCCTCTGAAGCCATGTTACAATGTGTCAGGAATTGATAAGATGGAGCTACCTGACTTTGGAATTTTATTTGCTGATGGAGCAGTGTGGAATTTCCCGGTGGAGAATTACTTTATCCAGATTGATTCTGATATTGTTTGCTTGGCTATTTTGGGAACTTCTCGATCTGCTCTTTCAATAATCGGAAACTATCAGCAGCAGAATTTCCACATACTATATGACATGAAGAAATCCAGACTTGGTTATGCAGCAATGAAGTGTGCTGATGGTTTAGTTTACACAGTAATTGATTATCTATTAGCAGAGGAACAGCAATTGACGGAGCAATCGAAATCGGTGGGGATGGTTGCTGTTAGGCAGTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAACATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTCTTGAGAAAATTGAAGAAGGTGAAGAAAAGCAATGGGCAAATGCTAGCCATTAACGAGATTTTTGAGAAGAATCCTACCAAGATTAAGAACTATGGAATTTGGCTGCGATATCAAAGTCGCACCGGTTATCATAATATGTACAAGGAGTACCGTGATACGACTCTGAATGGTACTGTTGAGCAAATGTACAATGAAATGGCATCTCGTCATAGAGTGAGGCATCCATGCATCCAGATAATTAAGACTGCCACCATGCCTGCTAAGCTGTGCAAAAGGGAGAGTACCAAGCAGTTCCACAATTCTAAAATCAAATTCCCATTGGTGTTCAAGAAAGTTAGGCCCCCAACTAGGAGGCTCAAGACAACATACAAGGCATCCAGGCCAAACCTGTTCATGTGA 2274 0.4468 MVLKVSLIIVLLVTCSCVVEAYSRNHDHRHNQNGSSMAAIKFPDHPSFSTVSSSGDTDCSLSSSEELGHSGSTMTSGEETDQKGEAFPAPRPHKQLVKLHLKHRSGSEDAEPKQSVVDSTVRDLTRIQNLHRRVIEKKNQNAISRLQKSQNQPKQSFEPVVSPGASPASGVSGQLVATLESGVSLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCIACFEQSGPYYDPKDSSSFRNISCHDPRCQLVSSPDPPRPCKGENQSCPYFYWYGDGSNTTGDFAVETFTVNLTTPSGGSELKHVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQMQSLYGHSFSYCLVDRNSNASVSSKLIFGEDKELLSHPNLNFTSFAGAKEDSVDTFYYLQIKSVMVDGEELKIPEETWHLSAEGAGGTIIDSGTTLTYFAEPAYEIIREAFVKKIKGYALIEGLPPLKPCYNVSGIDKMELPDFGILFADGAVWNFPVENYFIQIDSDIVCLAILGTSRSALSIIGNYQQQNFHILYDMKKSRLGYAAMKCADGLVYTVIDYLLAEEQQLTEQSKSVGMVAVRQFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGTVEQMYNEMASRHRVRHPCIQIIKTATMPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRRLKTTYKASRPNLFM 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5357g00002 757 ProSiteProfiles Peptidase family A1 domain profile. 190 547 IPR033121 -
Vium5357g00002 757 FunFam 60S ribosomal protein L18a 651 726 - -
Vium5357g00002 757 Pfam Xylanase inhibitor N-terminal 190 369 IPR032861 -
Vium5357g00002 757 MobiDBLite consensus disorder prediction 145 159 - -
Vium5357g00002 757 CDD pepsin_A_like_plant 189 551 IPR034161 -
Vium5357g00002 757 Pfam Xylanase inhibitor C-terminal 397 547 IPR032799 -
Vium5357g00002 757 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 205 216 IPR001969 GO:0004190|GO:0006508
Vium5357g00002 757 Gene3D - 574 650 - -
Vium5357g00002 757 Gene3D Acid Proteases 371 555 IPR021109 -
Vium5357g00002 757 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 586 707 IPR023573 GO:0003735|GO:0005840|GO:0006412
Vium5357g00002 757 Gene3D Acid Proteases 170 370 IPR021109 -
Vium5357g00002 757 Gene3D - 651 726 - -
Vium5357g00002 757 FunFam Aspartyl protease family protein 371 554 - -
Vium5357g00002 757 FunFam 60S ribosomal protein L18a 579 650 - -
Vium5357g00002 757 PANTHER OS07G0603500 PROTEIN-RELATED 143 551 - -
Vium5357g00002 757 MobiDBLite consensus disorder prediction 48 90 - -
Vium5357g00002 757 FunFam Eukaryotic aspartyl protease family protein 165 370 - -
Vium5357g00002 757 SUPERFAMILY Acid proteases 182 551 IPR021109 -
Vium5357g00002 757 Coils Coil 132 152 - -
Vium5357g00002 757 MobiDBLite consensus disorder prediction 48 80 - -
Vium5357g00002 757 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vium5357g00002 757 MobiDBLite consensus disorder prediction 145 169 - -
Vium5357g00002 757 PRINTS Pepsin (A1) aspartic protease family signature 523 538 IPR001461 GO:0004190|GO:0006508
Vium5357g00002 757 PRINTS Pepsin (A1) aspartic protease family signature 196 216 IPR001461 GO:0004190|GO:0006508
Vium5357g00002 757 PRINTS Pepsin (A1) aspartic protease family signature 428 439 IPR001461 GO:0004190|GO:0006508
Vium5357g00002 757 SUPERFAMILY RplX-like 650 725 - -
Vium5357g00002 757 Hamap 50S ribosomal protein L18Ae [rpl18a]. 585 648 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5357g00002 Vium-Chr5357 6090 11884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5357g00002 562 757 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 82.653 5.02e-114 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5357g00002 K22683 - zju:107416111 1077