Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5354g00002 ATGGCCACAGTAGAAATGATCATTGCATTCCACATGAAGGCTTTGGTCTTTTTCCTTTGCCTCTTTCTCCCCTCATTGCCCAAACACTTGCTAAGCTGTGAGACACCTTCACCTGATCTCTCTGCCTACCATTGCATCGAAAATGTCTCACACAACCAATGTGCAACATTTGCACTCTTTCTCACAAACTCCTACTACTCCTCTCTCTCCAACCTCACCACTTACTTGGGACTCAATAAGTTTGTGGTAGCACAGGCAAATGGATTCTCTCCACACACTGAGTTCCTCTCCCTAGATCAACCCCTTCTCATTCCAATTCATTGCACATGCAAAGGTCGCTTCTTTCATGCTCAGCTAACTAAAATTGCTATCAAAGGAGAGAACTTCTATGACATTGCTGCTTCACTTGAGGGCTTGACAACCTGCAAGGCTATTACTGACAACAACCCTGGTGTGTCACCTTGGAATCTTCATGACAAAGTCAGATTGATTATCCCATTGACCTGTTCTTGCCCCTTTTCATCACTTGTTAGACCTCAACCAAAGCTTCTGCTTTCTTATCCTGTAAGACAAGGTGATACACTTTCCACTTTGGCCTCCAAGTTTAATATTACTCAAGAAGCTATTGTCTCTGCCAATAACATATCATCATCACAAGGTCTCAGCACTAGAAGTTCTCTTCCACCCTTTACCTCTATTCTCATTCCTCTCAATGGTAAGCCTGTCATTGCTTCTTTTGTTAAACCCAAGGAACCCAATTCTGGCTTTCAAGCAACCGGCATCCCTGTAACCAGTCCACACAAGAAGTCACCAATGTGGAAGACTGAATTGTTCATTGGCCTTGCTGGGGTTGCTCTTGGAGTCTGCATTGCTCTTGCTGCAGCCTTTTTCTTCATCAGATTGAAGCACAAGAAGGGGGAAGAGAGTTCGTGCAAAAACGGAGATATGGAGCTTCAACATCTCAATCAAAGTGTGAGAACCAACTCCACCGGTGACAAGAAAGTTTCATTTGAAGGGTCTCAGGATACCCTTGATGAGAAAATTGTTGATGCCTCTTCGCGTAAGATGTTGCTGGAGACATACACCATCGAGAACATCAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGATCGGTATATCACGGTCGTCTGAATGGGAAGAACATGGCAATCAGGAGAACAAAGGCAGAAACAGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACCACCACCCCAACATACTCAGGCTTCTTGGAACAAGCATGTCAGAGGGGAAGGAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTCCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTCCTGACATGGAGGCAAAGGCTGAGGATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATGTTATGAATCCCTGCTATGTGCATAGGAATGTAAAGAGCAGGAACATCTTTCTGGACGAAGAATTTGGTGCCAATTTAGGGAATTTTGGTATGGCAGGTTGTGTTGAGAATGACACTGCGGATCCAAACTTCTATTCCACCAACCCCGCCTCCTGGAGCCTTGGTTATTTGGCACCTGAATACGTTCACCAAGGTATAATTGCCCCAAGCATTGATATCTTTGCCTATGGGGTGGTTTTGTTAGAGGTTTTATCTGGTCAAACTCCTATAAGCAGGCCCAATGAGAAGGGAGAAGGAAGCATTTGGCTCACAGATAAAATCAAGTCCATCTTGGTGTCTGAAAATGTGAATGAACTAAGGGGCTGGATAGACAGTGCATTAGGGGAGAACTATTCATTCGATGCAGCTGTGACCATTGTCAACATTGCCAGAGCTTGTGTGGAGGAAGATTCTTCATTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCGAGATTGGTGGAGGAATTACCAGAAGGAGAACAACACATGTTAATGAGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACTGTCTTGAGTAA 2073 0.4414 MATVEMIIAFHMKALVFFLCLFLPSLPKHLLSCETPSPDLSAYHCIENVSHNQCATFALFLTNSYYSSLSNLTTYLGLNKFVVAQANGFSPHTEFLSLDQPLLIPIHCTCKGRFFHAQLTKIAIKGENFYDIAASLEGLTTCKAITDNNPGVSPWNLHDKVRLIIPLTCSCPFSSLVRPQPKLLLSYPVRQGDTLSTLASKFNITQEAIVSANNISSSQGLSTRSSLPPFTSILIPLNGKPVIASFVKPKEPNSGFQATGIPVTSPHKKSPMWKTELFIGLAGVALGVCIALAAAFFFIRLKHKKGEESSCKNGDMELQHLNQSVRTNSTGDKKVSFEGSQDTLDEKIVDASSRKMLLETYTIENIRKATEDFSSSNHIEGSVYHGRLNGKNMAIRRTKAETVSKIDLGLFHDALHHHPNILRLLGTSMSEGKEQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWRQRLRICLDVASALQYMHHVMNPCYVHRNVKSRNIFLDEEFGANLGNFGMAGCVENDTADPNFYSTNPASWSLGYLAPEYVHQGIIAPSIDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIKSILVSENVNELRGWIDSALGENYSFDAAVTIVNIARACVEEDSSLRPSAREIVEKLSRLVEELPEGEQHMLMSESSSKPLVKAVENCLE 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5354g00002 690 SUPERFAMILY LysM domain 186 218 IPR036779 -
Vium5354g00002 690 ProSiteProfiles LysM domain profile. 185 235 IPR018392 -
Vium5354g00002 690 ProSiteProfiles Protein kinase domain profile. 322 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5354g00002 690 CDD LysM 186 221 IPR018392 -
Vium5354g00002 690 Pfam LysM domain 187 219 IPR018392 -
Vium5354g00002 690 SUPERFAMILY Protein kinase-like (PK-like) 356 657 IPR011009 -
Vium5354g00002 690 FunFam PTI1-like tyrosine-protein kinase 3 445 671 - -
Vium5354g00002 690 Gene3D LysM domain 185 236 IPR036779 -
Vium5354g00002 690 Pfam Protein kinase domain 381 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5354g00002 690 Gene3D Phosphorylase Kinase; domain 1 345 444 - -
Vium5354g00002 690 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 27 664 - -
Vium5354g00002 690 Gene3D Transferase(Phosphotransferase) domain 1 445 679 - -
Vium5354g00002 690 SMART LysM_2 186 236 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5354g00002 Vium-Chr5354 21835 24404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5354g00002 42 683 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 39.791 4.95e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium5354g00002 Pkinase 6.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5354g00002 - - gmx:100816082 1176