Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5353g00006 ATGGGATTTCCGGTAGGGTATCCGGAAGTGCTGGTCCCCAAGCTCTTCCTCCACGCGCTCTCGCTCCTCGCGTGGCTCCGCTCGCTCGTCGCCGCGTTCTTCCACCTACTCCGCCTCTCCGACCTCCTCGACACCGACGCTGCCGCGATCGCTTGGCCGCCGGAGTCTCCTCCGCCGCGCGCTCCGACTCTCTCCGCGCTCCTCATCCGCGAGTTTCTCCCCGTGGCAGCGTTCCGTGACCTTGACGGCGCTGGCGAGTCCCCTCCGTCCCCGTCGGGGTGCGCGGTGTGCCTGAGCGAGTTCTGCGCGGAGGAGGAGATCAGATGTATGGCGAACTGCAAACACATGTTCCACCGCGCGTGCGTGGATCGTTGGATCGATCACGATCAGAAGACGTGTCCTCTGTGTAGGACACCATTCGTGCCGGAGCACAAGGTGGAGGAGTATAACCAGCGGCTATGGGCAGCTTCTGGTGTTTCCCAGTTTTATCAAGACGATTACACTCCTACTCTCTGA 516 0.624 MGFPVGYPEVLVPKLFLHALSLLAWLRSLVAAFFHLLRLSDLLDTDAAAIAWPPESPPPRAPTLSALLIREFLPVAAFRDLDGAGESPPSPSGCAVCLSEFCAEEEIRCMANCKHMFHRACVDRWIDHDQKTCPLCRTPFVPEHKVEEYNQRLWAASGVSQFYQDDYTPTL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5353g00006 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 146 IPR013083 -
Vium5353g00006 171 SMART ring_2 94 136 IPR001841 -
Vium5353g00006 171 SUPERFAMILY RING/U-box 87 146 - -
Vium5353g00006 171 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Vium5353g00006 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 24 157 - -
Vium5353g00006 171 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5353g00006 Vium-Chr5353 22214 22987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5353g00006 1 158 C3H Transcription Factor Family AT1G63840 44.654 4.60e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5353g00006 K16281 - gmx:100813224 276.944