Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5347g00004 ATGCCCCTTCAAAGTGATGTATTTGTTGCCCCTTCTATTCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGGATGGGAAAGACTGTTGCTTTTATTCTTTCTACACTTTATCAAGTTGATCATGTTCCTGGTCAAGTTGCAGCTTTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAAATTTGCAATGAATTTGAGAGATTCAGCACATATCTTCTTGATATAAAGGTTGTTGTTTTCTATGGTGGTAGCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGAACACCTAAGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAAGAACATGAGACATTTCATACTTGATGAGTGTGACAAGATGCTTGAATCACTTAATATGAGAAGAGACGTCCAAGAGATTTTCAAATTGACTCCTCATAATAAACAAGTGATGATGTTTTCAGCTACACTTAGTAAAGAAATGAGTTTTATCTGCAAAATATTTATGAAAAAAATTTATGCAAGATCAATGGAAGTTTATATTGATGATGTAGCAAAGTTGACCCTTCGTGGACTTTTGCAGCTCCTAAAGCAAGGAGGAGTGAAAATGCTTTAG 636 0.3585 MPLQSDVFVAPSILGMDVICQAKSGMGKTVAFILSTLYQVDHVPGQVAAFVLCHTRELAYQICNEFERFSTYLLDIKVVVFYGGSNIKVHKELLKNECPHIVVGTPKRILALARDKDLGLKNMRHFILDECDKMLESLNMRRDVQEIFKLTPHNKQVMMFSATLSKEMSFICKIFMKKIYARSMEVYIDDVAKLTLRGLLQLLKQGGVKML 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5347g00004 211 Pfam DEAD/DEAH box helicase 10 168 IPR011545 GO:0003676|GO:0005524
Vium5347g00004 211 Gene3D - 1 190 IPR027417 -
Vium5347g00004 211 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 9 182 IPR014001 -
Vium5347g00004 211 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 182 - -
Vium5347g00004 211 SMART ultradead3 1 197 IPR014001 -
Vium5347g00004 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 179 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5347g00004 Vium-Chr5347 50010 50734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5347g00004 16 201 Eukaryotic Initiation Factors Gene Family AT5G11170 77.419 1.07e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5347g00004 K12812 - vum:124840600 385.571