Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5347g00001 ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCCCACCTCAAGCCTTCTGTTCTTGAGTCCTCTGACCAAGAAAATGGTGAGAAGAATGAGAGAAAATTGTGGCCCAGTTTTGGTGAGTTCAGTTTGGAGCAACTGAAGACTGCCACAAATGGGTTCTCCTCCGAAAACATAGTGTCTGAGCATGGTGAGAAAGCTCCCAATGTTGTATACAAAGCAAAGCTTGATAATGGACAGTGGATCGCCATCAAACGTTTCAACAAGTTTGCCTGGCCTGATTCTCGCCAATTCCTAGAGGAAGCCAAACAAGTGGGGAGCCTTAGAAGCGAACGCCTAGCAAATTTGATTGGTTATTGCTATGAAGGGGAAGAGAGGCTTCTAGTAGCAGAGTTTATGCCACATGAAACTCTGGCCAAGCATCTATTTCATTGGGAGGCACAGCCAATGAAGTGGGCCATGAGGTTGAGGGTCGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGCTTGTATCATGATCTCAATGCCTATAGGATCTTGTTTGATCAGGATGGTAATCCCAGGTTGTCCTGCTTTGGACTCATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACCCCTCCTGAGTACTTACGGACTGGTAGAGTGACCCCAGAGAGCGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCACGCACTTGATCTTATTCGTGGCAAAAACTTTCTGATGTTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCCTCTCGTTGTTTGCAATACGAAGCTCGTGAGAGGCCAAATGCAAAGTCTCTTGTTACGTCTCTTATGTCACTTCAGAAAGAAACAGAGGTCCCGTCGTATGTTCTGATGGGTCTACGGCAAGAAACTGCATCCTCAACAAAGCAATTGTCGTTAACACCTTTCGGTGAAGCCTGTTTGAGACTTGATCTTACTGCAATCCATGAAATATTGGAGAAGACTGGTTACAAGGACGACGAAGGAATTGCGAATGAGCTTTCCTTTCAATTGTGGACCAGCCAAATGCAGGAAACCTTGAATTTGAAGAAGCATGGCGATACAGCTTTTCGAGCTAAAGACTTTGTCACTGCCATTGACTGCTACACTCAATTCATAGAGGGAGGGACCATGGTGTCACCCACAGTGTATGCAAGGAGATGCTTATCATATTTGATGAATGACATGGCACAAGAAGCTCTTGGGGATGCCATGCAAGCCCAAGTTGTATCACCAGAATGGCCTACTGCTTTGTATCTTCAAGCAGCTTGTCTTTTTAGCCTTGGAATGGAGAAAGATGCTCAAGAGACTCTCAAAGATGGGACTAACATGGAAGCCAGAAAAAACAAAAACTGA 1476 0.4505 MGARCSKFSFCWFHSHLKPSVLESSDQENGEKNERKLWPSFGEFSLEQLKTATNGFSSENIVSEHGEKAPNVVYKAKLDNGQWIAIKRFNKFAWPDSRQFLEEAKQVGSLRSERLANLIGYCYEGEERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVTSLMSLQKETEVPSYVLMGLRQETASSTKQLSLTPFGEACLRLDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIEGGTMVSPTVYARRCLSYLMNDMAQEALGDAMQAQVVSPEWPTALYLQAACLFSLGMEKDAQETLKDGTNMEARKNKN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5347g00001 491 Coils Coil 483 491 - -
Vium5347g00001 491 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Vium5347g00001 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 20 490 IPR045845 GO:0004672|GO:0009742
Vium5347g00001 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Vium5347g00001 491 Gene3D Tetratricopeptide repeat domain 383 491 IPR011990 GO:0005515
Vium5347g00001 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Vium5347g00001 491 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Vium5347g00001 491 Pfam Protein tyrosine and serine/threonine kinase 73 310 IPR001245 GO:0004672|GO:0006468
Vium5347g00001 491 SUPERFAMILY Protein kinase-like (PK-like) 36 320 IPR011009 -
Vium5347g00001 491 FunFam probable serine/threonine-protein kinase At4g35230 384 491 - -
Vium5347g00001 491 SUPERFAMILY TPR-like 387 480 IPR011990 GO:0005515
Vium5347g00001 491 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5347g00001 Vium-Chr5347 21815 25846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5347g00001 19 310 Glycoside Hydrolase AT3G07070 33.438 1.72e-42 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vium5347g00001 PK_Tyr_Ser-Thr 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5347g00001 - - gmx:100814477 978.393