Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5340g00006 ATGGCTGAGCGGAATGAATCACAAGACAACAGAGAACTCTATGCACTTCTCAACTTGTCTCCGGATGCTTCCGATGAAGAAATCCGCAGAGCATATCGTCAATGGGCGCAAGCTTATCACCCCGATAAGTACCAAGCTCCTCACATGAAGGATATTGCCACGGAGAACTTTCAACGCATACGTGAAGCTTACGAGATTCTGTCAGATCCACATAAGAGACAAATATATGATATCTATGGAATGGAAGGTTTGACTTCTGGTTTGGAGCTTGGTTCAACGCTCAATGGAGCTGAAGTGATCAAGGCAGAGCTAGAGAGATTAAAGAGGATGAAGGAAAGGGAAAAATTGGCGGCGCATTTTCTACCTTCTGGTACAATTATAGCCAATATGTCTTTGCCGCGCTATTTAGACGGTGATGGCCTCCTCGTAGGAATGGCTATGACAAGTGAAATCCAGTCTCACTTATCCAAGCGCAATGCTTTTACAATTGGTGGTAATTTAGCAGTGAACGGAGGTGAAGGCGGTGGAGCTGCGAATGCTCTATTTAGGCATCAACTTTCAAAAGATTCGTCAGTAGAGTTTGTGGCTTCAGTTGGTTTGCGTGCACTAATTGGCGTGCAAACAACTCGTAATTTGTCATCACACTCAACAGCAACAATGGGCGTAGCAATGTCTTTGAGAGATGGTTCATTGAATCTTTCAAATTTGTGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTAATTTGGGACAGCAATCATCTATAGCTGTTGGGTGGCAAAAGAAAGATGAGAGAAGGTCTGCCTCTGGAGAATTAAAGTTTGGCACAGGTTTGTTTGAAGCAGCAGTTCATTGTACACATCGTTTTTCTCGTAAATCTCTTGGTTGCATTGCGGGAAGAGTTGGGAGTTCTTCCCTCGAGATTGAAGTTGGTGGTGGTAGGAAGTTATCCAAGTTCAGCTCAGTACGGTGGTTGTATGTAATAGGAATTCAGGGTATTTCCTGGAAATTTGAACTCTATCGTGGGGGTCAGAAGATAATTCTTCCAATTTTGCTGACAAGGCATCTTAACCCTGTGTTTGCTACTGGAGCATTTTTCATTCCTGCATCTCTTTACTTTTGTCTAAAGAAGTTTCTTATTAAACCTTATTACCTTAGAAGGAGTAAGCAGAAGGCTCTGGAGGAGGAGAAGGAAAGTTCTGCTCAGGTTAAGGAAGCATGGGCTGCAGCAGAGAAAGCACAGAAATTACAACAAAATGTGGCTAATAGGAAAAGAAACAGGCAATTAGAAACAGGTGGACTGGTTATTACGAGAGCACTATATGGAAATCAGATAGTTTTGAGCAACTTAAAGTCATCAAGTGAAACAAGTTTTGAATCAACTTCTGATGTCATTGATGTTACGATACCTCTGAATTTTCTTGTTAATGATTCTGGCCAACTCAAGCTTCATGAAGGTGTGAAAAAATCAGGAATTATGGGTTTTTGTGATCCATGTCCAGGAAGACCTAAAGAGTTGTATGTAGAGTACGTTTATGCTGGCAATCAATTCAAGGTTTGGGTTGGTGATTATGAAGAATTACAAATCCCTAAGGGCAGCCACAGGATATAA 1623 0.4196 MAERNESQDNRELYALLNLSPDASDEEIRRAYRQWAQAYHPDKYQAPHMKDIATENFQRIREAYEILSDPHKRQIYDIYGMEGLTSGLELGSTLNGAEVIKAELERLKRMKEREKLAAHFLPSGTIIANMSLPRYLDGDGLLVGMAMTSEIQSHLSKRNAFTIGGNLAVNGGEGGGAANALFRHQLSKDSSVEFVASVGLRALIGVQTTRNLSSHSTATMGVAMSLRDGSLNLSNLWTRQLSETASGHIELNLGQQSSIAVGWQKKDERRSASGELKFGTGLFEAAVHCTHRFSRKSLGCIAGRVGSSSLEIEVGGGRKLSKFSSVRWLYVIGIQGISWKFELYRGGQKIILPILLTRHLNPVFATGAFFIPASLYFCLKKFLIKPYYLRRSKQKALEEEKESSAQVKEAWAAAEKAQKLQQNVANRKRNRQLETGGLVITRALYGNQIVLSNLKSSSETSFESTSDVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGRPKELYVEYVYAGNQFKVWVGDYEELQIPKGSHRI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5340g00006 540 Coils Coil 94 117 - -
Vium5340g00006 540 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vium5340g00006 540 SMART dnaj_3 11 72 IPR001623 -
Vium5340g00006 540 Gene3D DnaJ domain 1 92 IPR036869 -
Vium5340g00006 540 PANTHER CHAPERONE PROTEIN DNAJ 13 1 540 IPR042162 -
Vium5340g00006 540 Pfam DnaJ domain 13 77 IPR001623 -
Vium5340g00006 540 CDD DnaJ 12 69 IPR001623 -
Vium5340g00006 540 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Vium5340g00006 540 Pfam DnaJ-like protein C11, C-terminal 386 534 IPR024586 -
Vium5340g00006 540 SUPERFAMILY Chaperone J-domain 9 89 IPR036869 -
Vium5340g00006 540 PRINTS DnaJ domain signature 32 47 IPR001623 -
Vium5340g00006 540 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vium5340g00006 540 PRINTS DnaJ domain signature 14 32 IPR001623 -
Vium5340g00006 540 PRINTS DnaJ domain signature 72 91 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5340g00006 Vium-Chr5340 7368 19967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5340g00006 14 79 C2H2 Transcription Factor Family AT1G74250 42.647 2.81e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5340g00006 K09531 - gmx:100817782 875.159