Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5337g00025 ATGAGCATCAGTGAAGAAGAAGGCAAAGGTGGCTCCAGGAAGCGCCGGCGTGAGGCGGAGGCGGAAAATGCATTCCGCGGAGTGCGGAAACGGAGCTGGGGACGTTACGTATCGGAGATAAGGCTGCCGGGTCAGAAAACCCGGATATGGCTTGGCTCCTTCGCGTCGCCTGAGATGGCGGCGAGGGCTTATGACTCAGCCGCTTTCTTCTTGAAAGGAACATCGGCCACCCTTAATTTCCCCGACCTCGTCCACTCCCTTCCTCGCCCTCTTTCCTCCTCCCGGAGAGACATACAATCCGCCGCCGCAACAGCCGCTCTCCACCCTCCTTCTCTCGGTACCGACACCAACAGCAATAGCAGCAGCTGGTTGGACAACTTGGGAGACGAATCCAGGATTTCGACGATGTCGTTTGAGGATGTGAAAGATGCCCCTCTGATGAGCCCCCTAAGGGTGGACTTGACTTTTGGAGATTTCTCATGGAACAACCTCTTCCATTTCAACTATGACGATGTTTTCATGTCATGA 528 0.5511 MSISEEEGKGGSRKRRREAEAENAFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFASPEMAARAYDSAAFFLKGTSATLNFPDLVHSLPRPLSSSRRDIQSAAATAALHPPSLGTDTNSNSSSWLDNLGDESRISTMSFEDVKDAPLMSPLRVDLTFGDFSWNNLFHFNYDDVFMS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5337g00025 175 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vium5337g00025 175 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
Vium5337g00025 175 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Vium5337g00025 175 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
Vium5337g00025 175 MobiDBLite consensus disorder prediction 98 121 - -
Vium5337g00025 175 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Vium5337g00025 175 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vium5337g00025 175 MobiDBLite consensus disorder prediction 1 23 - -
Vium5337g00025 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 122 - -
Vium5337g00025 175 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vium5337g00025 175 Pfam AP2 domain 25 73 IPR001471 GO:0003700|GO:0006355
Vium5337g00025 175 FunFam Ethylene-responsive transcription factor 2 23 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5337g00025 Vium-Chr5337 140643 141662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5337g00025 14 110 AP2-EREBP Transcription Factor Family AT5G11590 58.763 6.65e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium5337g00025 AP2 3.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5337g00025 K09286 - gmx:100783790 206.453