Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5337g00023 ATGGCTTCCTCTAATGGTGGTGTGCCGCCGGGATTTAGGTTTCATCCGACGGATGAAGAGCTTCTTCATTACTACTTGAAGAAGAAGGTCTCCTTTCAGAAGTTTGACATGGATGTTATTCGAGAGGTCGACTTGAACAAGATGGAGCCTTGGGATTTGCAAGAAAGATGTAGAATTGGATCAACTCCACAGAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCTACAGGTTCAAGGACTAATAGAGCAACGAATGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGTGCATTAGGAACAGCTACAAGAAGATTGGAATGAGAAAAACCCTTGTGTTTTACAAAGGAAGAGCTCCTCATGGACAAAAGACCGATTGGATCATGCACGAGTACCGTCTAGAAGATGCCAATGACCCTCAAGGAAGCGCCAACGAAGATGGGTGGGTGGTGTGCAGAGTGTTCAAGAAGAAGAATTTATTCAAGATTGGAAATGAAGGTGGGTCTACACATAACCCAGATCAACAAATGAACAATTCCTCAAGCACTAACGGACGCTCCTTCATACACAGAGAAAACCATTACTTGCTACACCAACACCAAAATCATAGAAACTCACCAGGGCTCGAGCTTGATAAGCCTGAGCTCGCTATCCATTACCCACACTTGCAAAATCCCCAATACTCACTGTTCCAGTCCCAAAACCTTCTTCAAACCCAAAAGCCTATGGTTTTTGACTACTCATATGCATCATCTCTACCTTCGGACACCCCTGTAATGGCAAAGCAACTTATGGGAAACCCTAGGGAGTGTGAGAGTGGCAGCGAGGGCCTAAGATATCAAGTTTCGGAGTCTGGCATTGAAGTTGGATCGTGCGAGCCAAATCAAGAAGTGGGTGGCGGAAGAGGTGAAGGAATCAACGAATGGGGCGTTCTTGATAGGCTAGTTACCTCCCATCTCGGGAATGAAGAATCAAACAAAGGGGTGAGGTTTGAGGAGACAAACCCTCAGTCTGTGCATCAGATCAACCAGCTTTCGTTACGGGGAGAGATGGATTTCTGGGCCTATGGAGGAAAACAATGA 1089 0.4564 MASSNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDANDPQGSANEDGWVVCRVFKKKNLFKIGNEGGSTHNPDQQMNNSSSTNGRSFIHRENHYLLHQHQNHRNSPGLELDKPELAIHYPHLQNPQYSLFQSQNLLQTQKPMVFDYSYASSLPSDTPVMAKQLMGNPRECESGSEGLRYQVSESGIEVGSCEPNQEVGGGRGEGINEWGVLDRLVTSHLGNEESNKGVRFEETNPQSVHQINQLSLRGEMDFWAYGGKQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5337g00023 362 MobiDBLite consensus disorder prediction 166 185 - -
Vium5337g00023 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 221 - -
Vium5337g00023 362 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Vium5337g00023 362 MobiDBLite consensus disorder prediction 167 185 - -
Vium5337g00023 362 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Vium5337g00023 362 FunFam NAC domain-containing protein 17 163 - -
Vium5337g00023 362 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Vium5337g00023 362 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5337g00023 Vium-Chr5337 126402 129082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5337g00023 1 355 NAC Transcription Factor Family AT1G33280 55.000 5.07e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium5337g00023 NAM 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5337g00023 - - gmx:100804181 680.633