Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5337g00022 ATGGTAGTCAACGAGAGACCATCCAAGAGGATGAAGAGGAGAGTCACAGTTGATCTCTATGATTTCCTCACTTTTCCGGCCACCGCCGACGTCTCCTCCGGCCAACCCTTTCGGACCTGTGTCCAACGCTTTCTCTCAGACCACGCGCGCATCACTTTCCCTCCCTCTTTATTTCCGTCTCTTATGACGTGGCAGATCTTGTTCCGTGTAGGAGACCTCGTTGATGGGCCCGATCTCTCACCTTCTGTTGTCACTCTTGACATTGTTGAGGAGGATGTTACTCGTTCTCGCACTTCTGTTTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTTTGTCGAAAGCGATATCATTTCATAATAAGGGCTGCAAGTAATGCAATCGAACCGTATCAAAGACCTTGTTCAAGATGTGGAAACCTTCTCCAATTATCTGAAACAAGCTGTAAATCGTGTAACTTTGCTATCACTGTGGATGACCTTGAGGACTGGGTGTATAATCAGATTGAAGATAACACCCATCTTCTTCATGGTGTGGTCCATTCCAATGGTTATGGTCACCTGCTTACTCTAAGTGGAAGAGAAGGTGGCTCTAAGCTTCTATCTGGATCTGATATTATGGATTTCTGGGACAGGCTATGTACTTCAATTTCTGTGAGGAAGGTTAGTGTGATGGACTTGTCCAAGAAATTCGGGCTGGAATACCGATTGCTTCATGCGATCACGAAAGGACATTCCTGGTATGGTAATTGGGCTTATGAATTTGGAACAGGCAGCTATGCTCTCACCCAAGATGCCTACAAAAACGCAGTGAATACCCTGTCAAGTATGCCCTTGTCATCATTTTCATTTCATGGACGGGGACCACGAAGCCGCCTGGAGTGTATTATTTCTCTTTACCAGTCTTTGGCAGAAACAGAACTTCTAAACATTCAAGATCTCTTCTCTTTTTTGTTGATGTTGATTCGTGAATGCCGTAAGCCAATAGCCATGAAAACTTTTAAGCAGACCAGTAATTTGTTGTGTACGTGGACGGGAAAAGATGTTGAAGAGGTGCAATGTGCTCTTGTCAAGGTATTGATTGCATCAGGTGCGTGTAACGAGTCTAAATGGGTGACAAGTCGTGCTCTGAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCACAGCTTCTTGACTACTGTCTTAAGCACTTCCCTGGGAAATTAGCAGCCAATGGGATGGTAGTTTGTTCACGATGTAATCCCGTTTCCTGTGCAATCGAGTTCAGGTTGGGGCCTATGAGTAATGGTCTAAATACATATTCAAGCTATCCTACTGAAAGGCAACTGATCTCTGACTTGACATTTTTATTCGACTCGATAATACATCCTGACAAAATGATGTCATACAGACCTAGGATTATGAGGAAAAGGGTTGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTTATGAAAGATTACAAGCCATATGAAATGGCCATCGAACTGCCTTCTGTTATCAGGTTGTGGTGTCATGTCGAACTTTCTGATCAGCCTAAGGACGATCCATCCCCACCGCCAGAGCTTATAGTGTTGCCTTTGAATGCTACCGTTGCTGAGCTCAAGAGCGAAGCCACTAGTGCTTTCCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAAGAACTCCTAGGATATGGGTCAATCAGTGACTCCCTCACCGTGAAGTTCTTGCTTGGAACAAGTGGATCAGTCCGCATTCAAGGTAAATGCCCAGCAAAACATGGGCTAAGCAGATTCCGAATGGAACGAGGAACTGAGGTGTGGAAGGTTGATTGCACTTGTGGAGCCAAGGATGATGACGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACCAGATGCGCTGGAATTGATAATTCTGATGGCATGCCTTCTAAGTTTGTTTGCATGAGGTGTGTCAACGTGTACCGTGAGGAAACAAAAAGATCACCATCATCTGTTGAGGAACCGAACGAAACCTGTATATTCAACTCATCTTGCAGAGATGAGGCAGCAGCTCCAACAGTTTCATGTAACATAACTGTGAATTTTGGTGTACGTTGA 2115 0.4515 MVVNERPSKRMKRRVTVDLYDFLTFPATADVSSGQPFRTCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDLVDGPDLSPSVVTLDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASNAIEPYQRPCSRCGNLLQLSETSCKSCNFAITVDDLEDWVYNQIEDNTHLLHGVVHSNGYGHLLTLSGREGGSKLLSGSDIMDFWDRLCTSISVRKVSVMDLSKKFGLEYRLLHAITKGHSWYGNWAYEFGTGSYALTQDAYKNAVNTLSSMPLSSFSFHGRGPRSRLECIISLYQSLAETELLNIQDLFSFLLMLIRECRKPIAMKTFKQTSNLLCTWTGKDVEEVQCALVKVLIASGACNESKWVTSRALKGAVCRGVSSPQLLDYCLKHFPGKLAANGMVVCSRCNPVSCAIEFRLGPMSNGLNTYSSYPTERQLISDLTFLFDSIIHPDKMMSYRPRIMRKRVADSARKLLDCKQFMKDYKPYEMAIELPSVIRLWCHVELSDQPKDDPSPPPELIVLPLNATVAELKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTVKFLLGTSGSVRIQGKCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNSDGMPSKFVCMRCVNVYREETKRSPSSVEEPNETCIFNSSCRDEAAAPTVSCNITVNFGVR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5337g00022 704 ProSitePatterns Zinc finger PHD-type signature. 612 656 IPR019786 -
Vium5337g00022 704 Pfam PHD-finger 612 657 IPR019787 -
Vium5337g00022 704 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 14 663 - -
Vium5337g00022 704 SUPERFAMILY FYVE/PHD zinc finger 601 658 IPR011011 -
Vium5337g00022 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 661 IPR013083 -
Vium5337g00022 704 CDD PHD_MMD1_like 611 656 - -
Vium5337g00022 704 SMART PHD_3 611 657 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5337g00022 Vium-Chr5337 111727 114972 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5337g00022 80 656 PHD Transcription Factor Family AT5G22260 27.941 7.43e-82 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium5337g00022 PHD 2.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5337g00022 K26271 - gmx:100780558 1263.44