Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5337g00015 ATGTCGTCCAACCCTCCCCCGCCGCCGCACTCTTCGCACAAACCCGGTCAAGACCATCCTGCCCCTGGAAAACCGTCATCGCCAGCCGGAAGAGCTAAGCTCCTGAAGATCCCGCCCATTCCTATTCGACGGAGTAATTTAGGCAATGAAGAGGAGAAAGAAGAGGAAGATGAATGCTCTGAATCTTCTTCCATCTTGCTGGCGTCCTCTTTAGGGCTCAATAACATTCGAACGCGTTCTTCCGCGTCGCCTCTTCGCTATTCCTCCTCCGTTGGCGCTCCTTCCTTTCTCACACAGAATGCTGCTGTCACCATCAATGACGCCAGATTTAGACCAAGATTGAATTCCCATCCACAAAGAGACCTAGGGGAAAAAGTTCATTTGAATCAATCCAGATCGCTCAGAGCTCATTCGCAACTCATTCCTGTGCTAGAGGGTCATCATGGAGCTTTCGCCAAAGAAATGCAATCCCCACGTTTTCAGGAAATCCTGCGACTTACAAGTGGACGCAAAAAGAGAAATCCTGATATCAAAAGCTTTTCCCATGAACTCAACTCCAAGGGAGTCAGACCATTTCCAATCTGGAAACATCGTGCCTTTGGCCACATGGAGGAAGTCATGGGGGCGATTAGAGCTAAGTTTGAGAAATTGAAGGAAGAAGTTGATTCTGACTTGGGTGGTTTCGCTGGAGATTTGGTGGGCATTCTTGAAAAAAACTTAGTGTGAGATCGTGAATGGAGAGAGAGGCTCGAGGATCTGTTGATTGTTGCTCAACAATGTGCAAAGATGTCTCCTACCCAGTTTTGGATCAAATGCGAATCTATAGTTCAAAATCTAGATGACAAACGTCAAGAATTGCCAGTGGGGATACTCAAGCAAGCTCATACACGTCTACTGTTTATTCTCACTCGTTGCACTCGATTAGTGCAATTTCAGAAGGAAAGCGGAATTGAACAAGACCACATTCTGGGTCTTCACCAACTCAGCGACCTTGGGGTCTATTCTGAGCAAATTTTGAAGGCTGCACAGCAAAATTCTAGTATTCCACCTGCTGGACACGAGACCGCTGACAAACAGTTAAAAATGTCACGTAGTAAAGAGAAAGACAAACCGATAACAACACAGGGTAAAGCTGACCAACAAGTAAGTGTGGCGATTGACAACCCGGAGGTTAGTACAACCAAGAGTGTTGAATCAACTTCTGGCAGCTATAGGATGTCTTCTTGGAGAAAGTTTCCAACTGCTGAGAAAAGGCGAAAAGATCAAGATGCTGCAGATACCCCATCCAAAGGTGAAATGGACCACTTGTTAATAAATGCTGAAAATTTGGATAATTCCTCTTGTCATCCTGAACATTCACAATCATCATCAAGAACGCGAAAGGTTTCTTGGGGATTCTGGGGAGATCACCATACTCTTACATACGGGGATTCAATGATATGCAGGATTTGTGAGGTTGAAATACCGATTGTACATGTGGAGGAGCATTCAAGAATATGCACAATTGCGGATAGATGTGATTTGAAAGGTTTAACTGTAAACGAACGGCTTGAAAGAGTTTCTGAAACCATTGAAAGGATAATGGAATTCTGGACACCAAAAAGCACACCCAAAAGCACTGATACTCCTGGAGAAAGCTTTGACCTTGCCGCTTCAAATGTGCTTGAAGAGTTCAATGATTTATCTCTAGAGAGAAATAACCTGACACTTAGATGCTCTGAAGACATGCTCGACTCTACAGATCTTGACAATACTTTTCTCATGGACGATCTGAACCTTTCACCCAGAACATCATGCGATGCTCGCATCTGTGTAAAACCTGATCACGGAACAAAGGTATCTTCAGCTGGGAGCTTGACACCGAGATCACCATTGATAACACCACGAACCACTCAGGTGGAATTGTTACTAAGTGGACGGAGAACATTGTCTGAACTTGAAAGTTGTGAACAGATAAGCAAGCTAGTTGAAATAGCCCGTGCTGTCGCAAATGTGAACAACTGTGACTACAGTGCTCTGGAGTATATGCTTGATCGCTTAGAAGACCTGAAATATGCCATTCAAGACAGAAAAGTGGATGCCCTTATTGTGGAGACTTTTGGACGACGAATAGAGAAACTTTTGCAGGAGAAATATATATCCCTTTGCGGGCAGATAGAAGATGAAAAGGTGGACTCATCAACTAGCGTAGCTGATGAGGAGAGTTCGGTGGAAGATGATGCAGTTCGTAGCCTTCGTGCTAGCCCTATTAATACTTGTTCCAAGGACCGAACCTCTATTGAAGACTTTGAAATAATAAAACCCATAAGTAGGGGTGCATTTGGACGCGTTTTTCTTACCCGAAAAAGAGCAACCGGTGATTTATTTGCTATAAAGGTTCTGAAAAAGGCCGATATGATCCGTAAAAATGCAGTTCAAAGTATTTTGGCTGAGAGAGACATACTTATTTCAGTTCGAAATCCTTTTGTGGTTCGATTTTTCTACTCTTTCACATGTCGGGAAAATCTTTATCTAGTTATGGAGTATTTGAATGGTGGAGATCTTTATTCGATGTTGAGAAATCTAGGGTGCTTAGATGAAAACATGACTCGAGTTTATATAGCAGAAGTTGTTCTTGCATTGGAGTATTTGCATTCCTTAAATGTGATTCACAGAGACCTGAAGCCAGATAACTTACTGATTGGTCAAGATGGCCATATTAAGTTAACAGATTTCGGGCTCTCCAAGGTTGGCCTTATCAACAGCACAGATGATTTATCAGCGCCATCGTTTTCGGCCATCCTAGAAGACGACGATATGCCAAAACCTAGACATTCTTCAAAACGGGAAGACCGTCAAAGACAATCAGTAGTTGGCACTCCGGATTACCTGGCACCTGAAATACTTCTTGGCATGGGACATGGTGCAACTGCTGATTGGTGGTCTGTGGGTGTCATAATGTATGAGCTTCTTGTGGGTATTCCACCATTTAATGCTGAACATCCACAGCAAATTTTTGATAACATAATTAACAGAGACCTACAATGGCCCAGTATTCCTGATGAGATCAGCTTTGAAGCATATGATTTGATAAATAAATTATTGAACGAAAACCCAGTCCAAAGATTAGGCGCGACAGGGGCTACAGAAGTTAAGCGCCACGCCTTCTTCAAAGATATTAATTGGGATACACTAGCAAGGCAGAAGGCTATGTTTATTCCATCGGCTGAAGGTCATGATACAAGTTATTTTATGAGCCGGTACATTTGGAATCCCGAGGACGAACACTGTCTCGGAGGTAGTGATTTTGATGAGATTAGTGGTTCCGGTAGCAGTGGTTCCGGCAGCGCTGTGTTAGACGAAGATGGTGATGAGTGTGGTAGTTTAACAGAGTTCGGTACTCATGCTCTTGTTGAATTGCCGCAGTACTCGTTTAGTAATTTCTCGTTTAAGAATTTGTCTCAGCTGGCTTCTATGAATTATGATTTGGTGGTTAGGAACACCAGGGAATCAACTCAATGA 3501 0.433 MSSNPPPPPHSSHKPGQDHPAPGKPSSPAGRAKLLKIPPIPIRRSNLGNEEEKEEEDECSESSSILLASSLGLNNIRTRSSASPLRYSSSVGAPSFLTQNAAVTINDARFRPRLNSHPQRDLGEKVHLNQSRSLRAHSQLIPVLEGHHGAFAKEMQSPRFQEILRLTSGRKKRNPDIKSFSHELNSKGVRPFPIWKHRAFGHMEEVMGAIRAKFEKLKEEVDSDLGGFAGDLVGILEKNLVXDREWRERLEDLLIVAQQCAKMSPTQFWIKCESIVQNLDDKRQELPVGILKQAHTRLLFILTRCTRLVQFQKESGIEQDHILGLHQLSDLGVYSEQILKAAQQNSSIPPAGHETADKQLKMSRSKEKDKPITTQGKADQQVSVAIDNPEVSTTKSVESTSGSYRMSSWRKFPTAEKRRKDQDAADTPSKGEMDHLLINAENLDNSSCHPEHSQSSSRTRKVSWGFWGDHHTLTYGDSMICRICEVEIPIVHVEEHSRICTIADRCDLKGLTVNERLERVSETIERIMEFWTPKSTPKSTDTPGESFDLAASNVLEEFNDLSLERNNLTLRCSEDMLDSTDLDNTFLMDDLNLSPRTSCDARICVKPDHGTKVSSAGSLTPRSPLITPRTTQVELLLSGRRTLSELESCEQISKLVEIARAVANVNNCDYSALEYMLDRLEDLKYAIQDRKVDALIVETFGRRIEKLLQEKYISLCGQIEDEKVDSSTSVADEESSVEDDAVRSLRASPINTCSKDRTSIEDFEIIKPISRGAFGRVFLTRKRATGDLFAIKVLKKADMIRKNAVQSILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSMLRNLGCLDENMTRVYIAEVVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSFSAILEDDDMPKPRHSSKREDRQRQSVVGTPDYLAPEILLGMGHGATADWWSVGVIMYELLVGIPPFNAEHPQQIFDNIINRDLQWPSIPDEISFEAYDLINKLLNENPVQRLGATGATEVKRHAFFKDINWDTLARQKAMFIPSAEGHDTSYFMSRYIWNPEDEHCLGGSDFDEISGSGSSGSGSAVLDEDGDECGSLTEFGTHALVELPQYSFSNFSFKNLSQLASMNYDLVVRNTRESTQ 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5337g00015 1166 ProSiteProfiles Protein kinase domain profile. 763 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5337g00015 1166 MobiDBLite consensus disorder prediction 1 15 - -
Vium5337g00015 1166 ProSitePatterns Serine/Threonine protein kinases active-site signature. 882 894 IPR008271 GO:0004672|GO:0006468
Vium5337g00015 1166 MobiDBLite consensus disorder prediction 930 949 - -
Vium5337g00015 1166 MobiDBLite consensus disorder prediction 411 430 - -
Vium5337g00015 1166 ProSiteProfiles AGC-kinase C-terminal domain profile. 1051 1153 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vium5337g00015 1166 SUPERFAMILY Protein kinase-like (PK-like) 747 1070 IPR011009 -
Vium5337g00015 1166 MobiDBLite consensus disorder prediction 1094 1115 - -
Vium5337g00015 1166 Gene3D Transferase(Phosphotransferase) domain 1 847 1068 - -
Vium5337g00015 1166 MobiDBLite consensus disorder prediction 357 374 - -
Vium5337g00015 1166 MobiDBLite consensus disorder prediction 375 408 - -
Vium5337g00015 1166 CDD STKc_MAST_like 769 1055 - -
Vium5337g00015 1166 SMART serkin_6 763 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5337g00015 1166 MobiDBLite consensus disorder prediction 928 950 - -
Vium5337g00015 1166 MobiDBLite consensus disorder prediction 440 455 - -
Vium5337g00015 1166 MobiDBLite consensus disorder prediction 1 62 - -
Vium5337g00015 1166 Pfam Protein kinase domain 763 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5337g00015 1166 Gene3D Phosphorylase Kinase; domain 1 761 1077 - -
Vium5337g00015 1166 PANTHER SERINE/THREONINE-PROTEIN KINASE 445 1109 - -
Vium5337g00015 1166 MobiDBLite consensus disorder prediction 344 455 - -
Vium5337g00015 1166 FunFam probable serine/threonine protein kinase IREH1 761 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5337g00015 Vium-Chr5337 47299 56446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5337g00015 32 1166 AGC Kinase Gene Family AT5G62310 62.060 0.0 1388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vium5337g00015 Pkinase 4.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5337g00015 - - gmx:100817975 1891.7