Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5337g00008 ATGACAATGATGCGAAAGACATTGTTGTCACTGTTATTAGTTTCCTCAGTTTTCTCAATAGCCACATCAACGAGGAGACATTCCAACAGCAACATAGATTGGTGGTGCAGCCAAACCCCATACCCCGAGCCATGCAAATACTACATGCAACAAACCCATTACCATCACAAACTCAAACACAGATCCGAATTCCGGGCAATTCTCGTTCACTTGGCGTTGGAAAGAGCAGTGATCATGAGAAGGAAAGCACGTGACTTGGGGCACAACGGGATCGCCAAGAAGCAGAAATCAGTATTCCGTGATTGTTTAAAGCTCTACGACAACACCGTGTTCCATCTTAACCGTACCCTCGACGGCCTTCGGGAGAAGAGAAGCTGTTCACCCTTTGATGCGCAGACGTGGCTCAGCACGGCTCGCACAAACATCGAAACATGTCAGAACGGGGCGCTAGAACTCGGAGTCGAAGATTTCATGGTTCCCACGGAGAGATGCAATGTAACCGAGATTATAAGCAATGGCTTATTCGTGAACTGGGCTTTCCTGAAGTACGAAGCGGTTCATTATACGGAAGATGCAGAGGCTGATTTTCCAAGTTGGTTTTCCATGCACGAGAGGAAGCTGTTGCAGTCTTCTTCAATAAGGGCACATCTGGTGGTGGCCAAAGATGGTTCGGGGCATTTCAAGAGTGTCCAAGCTGCTATCAATGCCGCTGCAAGGAGAAGGATAAAGAGCAGATTCATCATTCACGTGAAGAGAGGAGTTTACAGAGAGAACATTGAGATTGACAAGACCAATGACAACATTATGTTGTTCGGTGATGGCATGAGAAATACCATTATAACAAGTGGCAGAAGCGTCAATGCCGGCTATACCACCTATAGCTCCGCAACAGCAGGAGTTGATGGTCTTCACTTCATTGCAAGAGACATTACCTTCAGAAACACGGCGGGTCCTCTAAAGGGTCAAGCAGTGGCACTCCGATCAGCCTCCGATCTCTCTGTGTTCTATCGGTGCTCCATAGAAGGCTATCAAGACACTCTCATGGTCCACGCACAGCGACAATTTTACAGAGGATGCTACATATACGGCACAGTTGACTTCATATTTGGAAATGCCGCTGTTGTTTTCCAAAACTGTGTCATTCTTGTAAGAAGGCCCTTAAATGGACAGGCAAACATGATCACGGCCCAAGGTCGAGACGACCCATTTCAAAACACTGGGTTTTCAATCCATAACTCTCAGATCAGGGCTGCCCCAGATCTCAGGCCCGTTATTGGCAAGTTCAAGACCTTCTTGGGCCGCCCATGGCAACGTTACTCGAGAGTTGTGGTAATGAAATCATTCTTGGATAGCATGGTGAACCCAATGGGTTGGTCTCCGTGGGATGACTCTGATTTTGCTTTGAATACTCTGTATTATGGAGAGTACAAGAACTTTGGGCCCGCTTCATCCACCAGAAACAGGGTTCGATGGCCCGGTTTTCATAGCATAACTAGCCCAACCGAGGCATCACGGTTCACAGTTGCTAACCTTCTTGCTGGCCGCACTTGGTTGCCTGCCACTGGTGTGCCATTCACTTCTGGCCTTTGA 1590 0.478 MTMMRKTLLSLLLVSSVFSIATSTRRHSNSNIDWWCSQTPYPEPCKYYMQQTHYHHKLKHRSEFRAILVHLALERAVIMRRKARDLGHNGIAKKQKSVFRDCLKLYDNTVFHLNRTLDGLREKRSCSPFDAQTWLSTARTNIETCQNGALELGVEDFMVPTERCNVTEIISNGLFVNWAFLKYEAVHYTEDAEADFPSWFSMHERKLLQSSSIRAHLVVAKDGSGHFKSVQAAINAAARRRIKSRFIIHVKRGVYRENIEIDKTNDNIMLFGDGMRNTIITSGRSVNAGYTTYSSATAGVDGLHFIARDITFRNTAGPLKGQAVALRSASDLSVFYRCSIEGYQDTLMVHAQRQFYRGCYIYGTVDFIFGNAAVVFQNCVILVRRPLNGQANMITAQGRDDPFQNTGFSIHNSQIRAAPDLRPVIGKFKTFLGRPWQRYSRVVVMKSFLDSMVNPMGWSPWDDSDFALNTLYYGEYKNFGPASSTRNRVRWPGFHSITSPTEASRFTVANLLAGRTWLPATGVPFTSGL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5337g00008 529 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Vium5337g00008 529 SUPERFAMILY Pectin lyase-like 213 528 IPR011050 -
Vium5337g00008 529 Pfam Pectinesterase 217 514 IPR000070 GO:0030599|GO:0042545
Vium5337g00008 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 178 IPR035513 -
Vium5337g00008 529 CDD PMEI-like_3 34 177 - -
Vium5337g00008 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 177 IPR035513 -
Vium5337g00008 529 PANTHER PECTINESTERASE 17 519 - -
Vium5337g00008 529 Gene3D - 210 529 IPR012334 -
Vium5337g00008 529 NCBIfam pectinesterase inhibitor domain 7 176 IPR006501 GO:0004857
Vium5337g00008 529 FunFam Pectinesterase 210 529 - -
Vium5337g00008 529 Pfam Plant invertase/pectin methylesterase inhibitor 31 174 IPR006501 GO:0004857
Vium5337g00008 529 SMART PMEI_2 27 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5337g00008 Vium-Chr5337 29551 31880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5337g00008 35 529 Carbohydrate Esterase AT5G51490 59.761 0.0 633