Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5337g00007 ATGGACAATATCTTACCTATGTCAAGATATATGGATATTCCTATTCGACACTTGTACCAATGCAATACAAAGACAGAAAAAATGGCATTCTTTAGAACACTCCTATCAGTTGTTTTCCTCTCAACCTTTCTCCGATCAGCAGCATCAACAAACACCATCGATTCCCTCATACCCTACAAAAAGTTCATAAAAGATCAGTGCAATTCAACCACTAACGCAGCACTTTGCTACAACTCTCTCTCCCCGTACGCATCGAAGATCAAAAGAAACCGCCTAACGCTCACGAAACTCTCCATTCATGTGGCTCTAAAAGCAGCCAAGAGTGCCAATAGCACGTTGACGAGGTTGTCGAAGGTGAAGCTATCACATGGAGAAAGCTCCGTCATTGCCGACTGCAGAGAGACCATTGCGGACACGTTGGATCTGCTTCAGAAATCTACACAAGCGTTGGCACATTTGAACGGTGCCTCTACTGCTGATGAGAGGTTTCAATGGGACAGCATCAAGACCTGGCTCAGTGCTTCCATAACAGATGGATCTACTTGCATCGATGAGTTTGATGAAATAAAAGTGCGTTCTTCGCTGCGGAACATGATCAAAACCACCGTTTCTAACGTTTCTTCCTTGATTAGCATTGCTTTGGCACTCGTCAACAGGCTTTTCTAG 666 0.4414 MDNILPMSRYMDIPIRHLYQCNTKTEKMAFFRTLLSVVFLSTFLRSAASTNTIDSLIPYKKFIKDQCNSTTNAALCYNSLSPYASKIKRNRLTLTKLSIHVALKAAKSANSTLTRLSKVKLSHGESSVIADCRETIADTLDLLQKSTQALAHLNGASTADERFQWDSIKTWLSASITDGSTCIDEFDEIKVRSSLRNMIKTTVSNVSSLISIALALVNRLF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5337g00007 221 SMART PMEI_2 58 216 IPR006501 GO:0004857
Vium5337g00007 221 NCBIfam pectinesterase inhibitor domain 35 220 IPR006501 GO:0004857
Vium5337g00007 221 Pfam Plant invertase/pectin methylesterase inhibitor 61 216 IPR006501 GO:0004857
Vium5337g00007 221 PANTHER PECTINESTERASE INHIBITOR-LIKE 36 216 - -
Vium5337g00007 221 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 220 IPR035513 -
Vium5337g00007 221 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 220 IPR035513 -
Vium5337g00007 221 CDD PMEI-like_3 67 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5337g00007 Vium-Chr5337 27691 28783 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5337g00007 67 221 Carbohydrate Esterase AT1G53840 28.571 2.25e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5337g00007 - - vum:124840556 428.713