Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5337g00006 ATGGAAGCCATTTCTTCTAAGCATCTTCTGACAAATCTCTTGCTGATTTTTGCTTCTAGTTTCAGCACACTCTGTGCCAACACAGGCATCGAAAGACCACACCAAGAAGCCAACACAGTGTTCATCAGAACATCTTGCAGTTCCACAACTTATCCGAGACTCTGCTATAGCTCCTTAGTGAGTCATGCAGAGTTGATCCAAACAAATCGTGTGCTTTTAACGGGCGCCGCCCTTAACGTGACTCTTGCATCGGCGAAATCGACCGCAGCTGTGGTGTCGATGATGGCGAAGAGGCAGGGGCTGAAGCCCAGAGAGGTCGCAGCGATGAAAGACTGTGTGGAGGTGCTGAGTGACTCGGTGGATGAACTCAGAAGGTCTATCGATGGGATGATTCATCTCAGAACCTCCAATTTTGAGATGACGATGAGTGACCTACAGACATGGGTGAGTGCTGCTTTGACTGATGAGAACACTTGCACAGATGGATTTCAAGAGAGTCCCACCGCCGCCACCATTGGTGGTACAAACACTAAGACCCGTGTGAGAGGACTGGTTGTGCAGGTAGCCCAATTGACCAGCAATGCCTTGGCTTTGATTAATCAGCTAGCTAATCAAGGTTAA 621 0.4879 MEAISSKHLLTNLLLIFASSFSTLCANTGIERPHQEANTVFIRTSCSSTTYPRLCYSSLVSHAELIQTNRVLLTGAALNVTLASAKSTAAVVSMMAKRQGLKPREVAAMKDCVEVLSDSVDELRRSIDGMIHLRTSNFEMTMSDLQTWVSAALTDENTCTDGFQESPTAATIGGTNTKTRVRGLVVQVAQLTSNALALINQLANQG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5337g00006 206 CDD PMEI-like_3 44 204 - -
Vium5337g00006 206 SMART PMEI_2 37 198 IPR006501 GO:0004857
Vium5337g00006 206 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 203 IPR035513 -
Vium5337g00006 206 PANTHER PECTINESTERASE INHIBITOR-LIKE 13 198 - -
Vium5337g00006 206 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 204 IPR035513 -
Vium5337g00006 206 Pfam Plant invertase/pectin methylesterase inhibitor 41 198 IPR006501 GO:0004857
Vium5337g00006 206 NCBIfam pectinesterase inhibitor domain 10 202 IPR006501 GO:0004857
Vium5337g00006 206 FunFam Pectinesterase inhibitor 3 37 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5337g00006 Vium-Chr5337 24719 25791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5337g00006 42 202 Carbohydrate Esterase AT1G53830 33.129 8.55e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5337g00006 - - vra:106755267 358.992