Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5337g00005 ATGGAAGCCATATCTTGCAAGCACCTTATCACGTCCCTTTTCATAATTCTTTCTTCTAGTCTCACCGCCGCACACGGTGGCAGAAGACTGAGTGAAAGACCATACCAAGAAGCGAGCACGGTGTTCATCAGAACATCTTGTAGTTCAACAACGTATCCAACACTCTGCTACAGCTCCCTGGTGAAGCATGCAGACTCGATCCAAACAAATCGCGTGGTGTTAGCCGGGACGGCCCTGAACGTGACTCTTGCGTCGGCGAAATCGACATCGGCAATGATGAGGACGCTGGGAAAGAGACAGGGGCTGAAGCCAAGAGAGGTGGCGGCGATGAAGGACTGCGTGGAGGAGCTGGGTGACTCGGTGGATGAACTCAGAAGGTCCATCGATGAGATGAGTCATCTTAGAGGGTCGAACTTTGAGATGACGATGAGCGACGTGCAAACGTGGGTGAGTGCTGCTCTGACGGACGAGAGCACCTGCACCGATGGCTTCCAAGAGACTGCCACCGGTGCTACAAATATTAAGAGCACTGTGAGAGGTCAAGTTGTGCATGTAGCACAATTGACCAGCAATGCATTGGCTTTGATAAATCAGCTAGCCAATTCTCATGGTTAA 615 0.5122 MEAISCKHLITSLFIILSSSLTAAHGGRRLSERPYQEASTVFIRTSCSSTTYPTLCYSSLVKHADSIQTNRVVLAGTALNVTLASAKSTSAMMRTLGKRQGLKPREVAAMKDCVEELGDSVDELRRSIDEMSHLRGSNFEMTMSDVQTWVSAALTDESTCTDGFQETATGATNIKSTVRGQVVHVAQLTSNALALINQLANSHG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5337g00005 204 PANTHER PECTINESTERASE INHIBITOR-LIKE 10 195 - -
Vium5337g00005 204 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Vium5337g00005 204 Pfam Plant invertase/pectin methylesterase inhibitor 42 195 IPR006501 GO:0004857
Vium5337g00005 204 CDD PMEI-like_3 45 201 - -
Vium5337g00005 204 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 199 IPR035513 -
Vium5337g00005 204 SMART PMEI_2 38 195 IPR006501 GO:0004857
Vium5337g00005 204 NCBIfam pectinesterase inhibitor domain 9 199 IPR006501 GO:0004857
Vium5337g00005 204 FunFam Pectin methylesterase inhibitor 1 38 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5337g00005 Vium-Chr5337 18900 19681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5337g00005 39 199 Carbohydrate Esterase AT1G53830 32.515 7.62e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5337g00005 - - gmx:100305537 314.309