Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5330g00017 ATGGAAGAAGACCAAGAGTCTCGGCATCAAAGGGAAAATCGAGGGTCTGTTCCTCGGGAAGGAGAAGGGTTAGGGGGTAATGGAGGAGGTGTTAACTGCAATGAGATTCGTTCTTTCACGTGCGATATCTGCAACAAAGGTTTCAGTTCGGGTAAAGCTCTTGGTGGGCACATGAGAATCCACAACCTCTCGAGAAAACGGGTTCATGGGGAGAAACAAAGCACCGGTGATGCTGCAAAATCCAAGACGGCGAAATGGGTGATGGTGGATGGTAACCCCACTTGTTCCGTTTGTGGAAAGACCTTTTCTTCCAGGAAGTCCTTGTTTGGGCACATGAGGTCTCACACTGAGAAGCCGAGGAAGGGAATTCGAAGCAACGCTCCGATCGTTCGTGCCTCCTCCAATTCCACTTCTTCCTCAACCCTTTCTGATGATTTGACCGTTGATCTCTCTCTAGTTCTCAGGGGTTGGTCCGTCACTGCCAAGAGGGGCCGCATAAGCTCTTCTTGCAGCAAATCAGATTCTGGTTTGGAAGAAGGTGATGAGATTGAGCCACGTATGCAAGAGGCTGCGTATGTGCTCATGTTGCTGGCCAGAGGGAGTCCGAAGTGCGAGCAAGTGGTTGTCGCTGATCAGATTCAAGAACATCCATTCAACAAGAGGGGACGTGAAGAGGAGCTGTCACACCCAGTTTTGGGGAATTCTGATGACGTGAAGATCAAGAAGAGAAATAGAAAGAAGGTGAAATTAACAGAATTAGCATCAACTGGGGAAGAAGGGAACAGATTCGCCAGATGCAGAAAATGCAATACAAGTTTCCCAAGTCACCAATCTTTGAATGATCATCTATGCAGCCTTCAAAATTCTAAGAACATTGAGTCTCGGTCACATGGTGTGTCAGCCACAAAAGAAGAGCATCATGCCAAAACAACCATACAGGGGGAGAAAACAGGACCAGGAACTGTTTTAGAGGATAGAGCTGTGGAAGCCATGAGAGGGTATGAGTGTGAAGTTTTGAAGGAGACTTTCTCAATCGGTCAAGCCTTTGGGGACCACAAGAGATCTGATTGGACCAGGATGGGAGAAGGTCAGTCAGCTCAGGCAACTTCTTCAAACATGGGAAATGGTCAGAATTGTTCCAAGGTTCTGAGTTTTGATCTCAATCAGATTCCTGCTATGGATGGGGAAGAGGGTGTTCAATCAGATTTGTTTATTCCTGCCAACATTATGACATCATCGAGTTATGATTCCTCTTGCTAA 1260 0.469 MEEDQESRHQRENRGSVPREGEGLGGNGGGVNCNEIRSFTCDICNKGFSSGKALGGHMRIHNLSRKRVHGEKQSTGDAAKSKTAKWVMVDGNPTCSVCGKTFSSRKSLFGHMRSHTEKPRKGIRSNAPIVRASSNSTSSSTLSDDLTVDLSLVLRGWSVTAKRGRISSSCSKSDSGLEEGDEIEPRMQEAAYVLMLLARGSPKCEQVVVADQIQEHPFNKRGREEELSHPVLGNSDDVKIKKRNRKKVKLTELASTGEEGNRFARCRKCNTSFPSHQSLNDHLCSLQNSKNIESRSHGVSATKEEHHAKTTIQGEKTGPGTVLEDRAVEAMRGYECEVLKETFSIGQAFGDHKRSDWTRMGEGQSAQATSSNMGNGQNCSKVLSFDLNQIPAMDGEEGVQSDLFIPANIMTSSSYDSSC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5330g00017 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Vium5330g00017 419 FunFam Zinc finger protein 93 116 - -
Vium5330g00017 419 Gene3D Classic Zinc Finger 31 92 - -
Vium5330g00017 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Vium5330g00017 419 MobiDBLite consensus disorder prediction 1 29 - -
Vium5330g00017 419 FunFam Zinc finger protein 37 62 - -
Vium5330g00017 419 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Vium5330g00017 419 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 190 394 IPR044653 GO:0003700
Vium5330g00017 419 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vium5330g00017 419 MobiDBLite consensus disorder prediction 299 319 - -
Vium5330g00017 419 Gene3D Classic Zinc Finger 94 122 - -
Vium5330g00017 419 Pfam C2H2-type zinc finger 39 61 - -
Vium5330g00017 419 Pfam C2H2-type zinc finger 95 116 - -
Vium5330g00017 419 SMART c2h2final6 264 284 IPR013087 -
Vium5330g00017 419 SMART c2h2final6 39 61 IPR013087 -
Vium5330g00017 419 SMART c2h2final6 93 115 IPR013087 -
Vium5330g00017 419 SUPERFAMILY beta-beta-alpha zinc fingers 37 115 IPR036236 -
Vium5330g00017 419 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5330g00017 Vium-Chr5330 170755 172851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5330g00017 37 128 C2H2 Transcription Factor Family AT2G26940 36.842 4.03e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium5330g00017 zf-C2H2_6 4.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5330g00017 - - vra:106765955 738.028