Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5330g00016 ATGACAACCCTTCGTGTGCTGCTTTTTCTGGGATTCTTGTGGGCTGAAATTCATGTCATTTCTTCATACACTGAAACTGCAGACGTTGTTGCACTTAGATCACTAAAAGATGTATGGCAAAATACACCGCCCAGTTGGGACAAATCAGATGACCCATGTGGAGCACCATGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTTCATTAGGACTGTCAACAATGGGCCTGAAGGGGAAATTAAGTGGAGATATTGGTCAACTTACAGAACTGAGATCCTTGGATTTGTCCTTTAATAGAGATTTAACAGGTCCTCTCTCTCCAGAGTTAGGAGAACTAAGCAAGCTAAATATCCTGATTTTGGCTGGTTGCGGCTTCAGTGGCAATATTCCAGATGAATTAGGAAATCTTTCAGAGTTATCTTTCCTGGCTTTAAACTCAAACAACTTCACTGGAAAAATACCTCCTTCGTTGGGTAAACTCTCCAAAATTTATTGGTTGGACTTGGCAGACAATCAGCTGACAGGTCCTATCCCAGTTTCAACCTCCACCTCCCCTGGATTAGACCTTCTTTTAAAGGCTAAACACTTCCATTTCAATAAGAACCAGCTTTCAGGTTCCATTCCCCCCAAGCTTTTCAGCTCTGAGATGATACTCATACACATATTGTTTGATGGGAATAATTTAAGTGGGACTATACCTTCAACATTGGTACAAGTTAAGACTGTTGAGGTTCTACGGCTTGATAGGAATTTCCTGACAGGAGAGGTCCCATCAAATCTCAACAACCTTACAAACATCAATGAATTGAATTTAGCTCATAACAATTTCACAGGTCCTCTACCTGACTTAACTGGAATGGATACCCTCAACTATGTAGATCTTAGTAACAACTCTTTTGATCCTTCTGATGCTCCAACTTGGTTCATAACTCTGCAATCACTCACCACTCTGGTTATGGAGTTTGGGTCCCTTCAAGGTCCTCTTCCATCGAAACTATTTGACATTCCTCAAATACAGCAAGTGAAACTACGAAACAATCAATTGAACGATACACTGAACATGGGTGAAAACATTTGTCCTCAATTGCAGCTTGTAGATTTGCAACAAAATGAGATTTCCTCGGTGACTCTCAGTTCACAATACAAAAATACATTGATTCTAATAGGAAATCCAGTGTGCAGTAGTGCTCTCTCAAATACAAATTACTGCCAACTTCAGCAGCAGGCCAAGCAACCTTATTTCACCAGCTTGGCTAATTGTGGAGGCAAATCTTGTCCTCCTGATCAAAAGCTCAGCCCCCAAAGTTGTGAATGTGCCTATCCATATGAAGGAATGCTGTACTTTAGAGCACCCACATTCAGAGAACTGTCCAATGTAAATACTTTCCATTCACTTGAAATGAGCCTATGGGTGAAATTGGGTCTAACTCCTGGCTCAGTTTCTTTACAAAATCCCTTCTTTGATAGTAATGACTATCTTCAAGTGCAACTAGCACTTTTTCCACCAACAGGGCAATACTTTAATAGGTCAGAAATTCAAAGAATTGGGTTTGAATTAAGTAATCAAACTTACAAGCCTCCAAAAGAGTTTGGACCCTATTACTTCCTTGCATTTTCTTATCCCTTTTCAGGTTCTCACAAAGGAGCTTCTCTTAGCAAAGGGGTTATTATTGGGATAGCAGTTGGCAGCACATTTCTGGTTCTGAGTCTTATAGGGTTAGCTATTTACGCGATTCTGCAAAAGAAGCGTGCAGAGAGAGCCATAGGATTAAGTAGACCATTTGCATCATGGGCACCAACTGGGAAGGATAGTGGAGGTGCACCACAGTTAAAGGGAGCAAGATGGTTCTCTTATGATGATCTCAAGAAGTGCACCAGCAATTTCTCTGAAAACAATGAGATAGGCTCTGGAGGCTATGGCAAGGTGTACAAAGGTGTTCTTCCTGATGGGAAAATCGTTGCAATCAAACGAGCTCAGCAAGGATCGATGCAAGGAGGCCTAGAGTTCAAGACTGAAATTGAGTTGCTTTCAAGAGTTCACCACAAGAACCTTGTTGGCCTTGTGGGGTTCTGCTTCGAACAAGGGGAACAGATGTTGGTTTACGAATTTATACCCAATGGAACACTTAGGGAGAGTTTGTCAGGGAGATCTGATATTCATCTTGACTGGAAAAGGAGACTCCGCATTGCTCTTGGTTCAGCCAGAGGACTTGCATACTTACACGAACTTGCCAATCCTCCCATAATCCACAGAGATGTGAAGTCGAGTAATATCTTGCTGGATGAAAATTTGACTGCAAAGGTTGCAGATTTTGGCTTGTCCAAACTTGTATCAGACAGCGAGAAAGGCCATGTTTCCACTCAGGTTAAAGGGACATTGGGTTATCTTGATCCTGAGTATTACATGACCCAACAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGAGTAGTGATGCTTGAACTAATAACTTCAAGACAACCAATTGAGAAGGGCAAGTACATTGTCCGCGAGGTGCGCACGCTGATGAATAAGAAAGATGAAGAACACTATGGTTTGAGGGAAGTGATGGATCCAGTGGTGAGGAACACGCCGAACCTCATAGGATTTGGGAGGTTCTTAGAGTTGACAATGCAATGTGTTGAGGAATCAGCTGCAGACCGTCCAACAATGAGTGAAGTTGTGAAAGCACTTGAAACCATTTTGCAGAATGATGGGATGAACACAAACTCTACTTCTGCATCCTCATCTGCCACTGACTTTGGTGTTTCCAAGGGTGGAATGAGGCATCCCTACATTGATGCTTCTTTTACCAAGAAAGACAATGGTAATGACAGTAGTAATAGTGCCTTTGACTACAGCGGAGGCTACACACTTTCAACAAAAGTTGAACCCAAATAG 2904 0.4208 MTTLRVLLFLGFLWAEIHVISSYTETADVVALRSLKDVWQNTPPSWDKSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLSGDIGQLTELRSLDLSFNRDLTGPLSPELGELSKLNILILAGCGFSGNIPDELGNLSELSFLALNSNNFTGKIPPSLGKLSKIYWLDLADNQLTGPIPVSTSTSPGLDLLLKAKHFHFNKNQLSGSIPPKLFSSEMILIHILFDGNNLSGTIPSTLVQVKTVEVLRLDRNFLTGEVPSNLNNLTNINELNLAHNNFTGPLPDLTGMDTLNYVDLSNNSFDPSDAPTWFITLQSLTTLVMEFGSLQGPLPSKLFDIPQIQQVKLRNNQLNDTLNMGENICPQLQLVDLQQNEISSVTLSSQYKNTLILIGNPVCSSALSNTNYCQLQQQAKQPYFTSLANCGGKSCPPDQKLSPQSCECAYPYEGMLYFRAPTFRELSNVNTFHSLEMSLWVKLGLTPGSVSLQNPFFDSNDYLQVQLALFPPTGQYFNRSEIQRIGFELSNQTYKPPKEFGPYYFLAFSYPFSGSHKGASLSKGVIIGIAVGSTFLVLSLIGLAIYAILQKKRAERAIGLSRPFASWAPTGKDSGGAPQLKGARWFSYDDLKKCTSNFSENNEIGSGGYGKVYKGVLPDGKIVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFIPNGTLRESLSGRSDIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSSNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLREVMDPVVRNTPNLIGFGRFLELTMQCVEESAADRPTMSEVVKALETILQNDGMNTNSTSASSSATDFGVSKGGMRHPYIDASFTKKDNGNDSSNSAFDYSGGYTLSTKVEPK 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5330g00016 967 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Vium5330g00016 967 FunFam Leucine-rich repeat protein kinase family protein 597 704 - -
Vium5330g00016 967 SUPERFAMILY Protein kinase-like (PK-like) 615 911 IPR011009 -
Vium5330g00016 967 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 705 916 - -
Vium5330g00016 967 FunFam Leucine-rich repeat family protein 27 183 - -
Vium5330g00016 967 Pfam Protein tyrosine and serine/threonine kinase 632 899 IPR001245 GO:0004672|GO:0006468
Vium5330g00016 967 Gene3D Phosphorylase Kinase; domain 1 603 704 - -
Vium5330g00016 967 FunFam Predicted protein 186 407 - -
Vium5330g00016 967 SUPERFAMILY L domain-like 35 397 - -
Vium5330g00016 967 MobiDBLite consensus disorder prediction 935 967 - -
Vium5330g00016 967 Gene3D Ribonuclease Inhibitor 189 414 IPR032675 -
Vium5330g00016 967 Gene3D Ribonuclease Inhibitor 26 188 IPR032675 -
Vium5330g00016 967 ProSiteProfiles Protein kinase domain profile. 629 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5330g00016 967 PANTHER RECEPTOR-LIKE PROTEIN 55 33 902 - -
Vium5330g00016 967 Gene3D Transferase(Phosphotransferase) domain 1 705 924 - -
Vium5330g00016 967 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524
Vium5330g00016 967 CDD STKc_IRAK 635 902 - -
Vium5330g00016 967 SMART serkin_6 629 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5330g00016 967 MobiDBLite consensus disorder prediction 940 957 - -
Vium5330g00016 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5330g00016 Vium-Chr5330 145887 151713 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5330g00016 2 967 Receptor kinase-like Gene Family AT1G79620 70.121 0.0 1419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vium5330g00016 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5330g00016 - - gmx:100792249 1789.24