Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5330g00014 ATGGGTAGTAGTGACATGGACAAAACCCCTAAGGAGAAGGAGTCTAAGACACCTCCAGCTACGTCACAGGAGCAGTCTCCAACAACTGGCATGGCCACTATTAATCCTGACTGGTCTAACTTTCAGACATATTCTCCCATACCTCCTCACAGTTTCTTGGCATCAAGTCCCCAAGCCCACCCATTTATGTGGGGTGTCCAGCATGTTATGCCTCCCTATGGCACCCCACCGCATCCTTATGTAGCAATGTATCCCCATGGTGGCATTTATGCCCATCCATCCATTCCTCCGGGCTCTTATCCTTTCAGTCCTTTTGCCATGGCTTCTCCAAATGGTATTGCAGATTCTTCGGGAAATAACCCAGGCACCATTGAAGTTGGTGCTAAACCTCCTGAGGTGAAGGAAAAATTACCAGTCAAAAGATCAAAAGGAAGTGCTAGTGGGGGTAGTTTGAATATGTGGATTACAGGAAAAAATAGTGAACTTGGTAAAACAAACGGAGAATCTGCTAATGGGATTCATTCCAAGAGTGGTGATAGTGCAAGTGACGGAACTAGTGAAGGAAGTGGTGAGAATTCCCAGAATGATTCTCAATTGAAATCCGGGGAGAGGCAGGACTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCGGCTCCTCAAAACGGGGTACATAGTAGACCTCAGACACTTGTTAACCAAACTATGCCTGCCATACCTATATCTACTGCAAGTGCTCCCGGAGCAATTCCTGGTCCCACAACTAATTTAAATATAGGAATGGATTACTGGGGCACGCCAACTTCATCCGCCATTCCTGCACTGCATGGAAAGGTTTCTTCTACTGCCGTTGCTGGGGGGATGATTACTGCTGGGTCAAGAGATGGTGTTCAGTCACAAATTTGGCTACAGGACGAAAGAGAGCTTAAAAGACAAAGGCGGAAGCAGTCTAATAGAGAATCTGCACGCAGATCCAGGTTACGGAAGCAGGCTGAATGCGATGAACTAGCTCAGCGTGCTGACGTTTTGAAAGAAGAAAATGCCACTCTCCAAGCAGAAGTAAGCAGGATCAGGAATGAGTACGAGCAGCTACTTTCTGAGAATGCTTCCCTCAAGGAGAGACTTGGGGAGATACCTGGTGTTGCTACTCCTGGGAACGAGGATGTTAGGTCTGGCCAGAATGATCAGCATGTTACTAATGACACTCAACAAAGTCGTCAGAAGGAGGCTGTGCAGGGTGTTCATTAG 1248 0.4679 MGSSDMDKTPKEKESKTPPATSQEQSPTTGMATINPDWSNFQTYSPIPPHSFLASSPQAHPFMWGVQHVMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMASPNGIADSSGNNPGTIEVGAKPPEVKEKLPVKRSKGSASGGSLNMWITGKNSELGKTNGESANGIHSKSGDSASDGTSEGSGENSQNDSQLKSGERQDSFEDEPSQNGSSAPQNGVHSRPQTLVNQTMPAIPISTASAPGAIPGPTTNLNIGMDYWGTPTSSAIPALHGKVSSTAVAGGMITAGSRDGVQSQIWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENATLQAEVSRIRNEYEQLLSENASLKERLGEIPGVATPGNEDVRSGQNDQHVTNDTQQSRQKEAVQGVH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5330g00014 415 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 313 328 IPR004827 GO:0003700|GO:0006355
Vium5330g00014 415 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 308 371 IPR004827 GO:0003700|GO:0006355
Vium5330g00014 415 SMART brlzneu 306 370 IPR004827 GO:0003700|GO:0006355
Vium5330g00014 415 Pfam bZIP transcription factor 306 368 IPR004827 GO:0003700|GO:0006355
Vium5330g00014 415 Pfam Disordered region downstream of MFMR 135 273 - -
Vium5330g00014 415 MobiDBLite consensus disorder prediction 387 415 - -
Vium5330g00014 415 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Vium5330g00014 415 MobiDBLite consensus disorder prediction 114 227 - -
Vium5330g00014 415 CDD bZIP_plant_GBF1 311 361 IPR045314 GO:0003700|GO:0006355
Vium5330g00014 415 MobiDBLite consensus disorder prediction 308 329 - -
Vium5330g00014 415 SUPERFAMILY Leucine zipper domain 309 365 IPR046347 GO:0003700|GO:0006355
Vium5330g00014 415 MobiDBLite consensus disorder prediction 372 415 - -
Vium5330g00014 415 MobiDBLite consensus disorder prediction 19 40 - -
Vium5330g00014 415 MobiDBLite consensus disorder prediction 145 201 - -
Vium5330g00014 415 MobiDBLite consensus disorder prediction 1 18 - -
Vium5330g00014 415 Gene3D - 309 363 - -
Vium5330g00014 415 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 407 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vium5330g00014 415 MobiDBLite consensus disorder prediction 211 227 - -
Vium5330g00014 415 Coils Coil 326 374 - -
Vium5330g00014 415 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5330g00014 Vium-Chr5330 125678 132864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5330g00014 1 379 bZIP Transcription Factor Family AT2G35530 61.893 9.52e-154 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium5330g00014 MFMR_assoc 1.1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5330g00014 K09060 - gmx:100101912 742.265