Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5330g00013 ATGGGTAGTAGTGACATGGACAAAACCCCTAAGGAGAAGGAGTCTAAGACACCTCCAGCTACGTCACAGGAGCAGTCTCCAACAACTGGCATGGCCACTATTAATCCTGACTGGTCTAACTTTCAGACATATTCTCCCATACCTCCTCACAGTTTCTTGGCATCAAGTCCCCAAGCCCACCCATTTATGTGGGGTGTCCAGCATGTTATGCCTCCCTATGGCACCCCACCGCATCCTTATGTAGCAATGTATCCCCATGGTGGCATTTATGCCCATCCATCCATTCCTCCGGGCTCTTATCCTTTCAGTCCTTTTGCCATGGCTTCTCCAAATGGTATTGCAGATTCTTCGGGAAATAACCCAGGCACCATTGAAGTTGGTGCTAAACCTCCTGAGGTGAAGGAAAAATTACCAGTCAAAAGATCAAAAGGAAGTGCTAGTGGGGGTAGTTTGAATATGTGGATTACAGGAAAAAATAGTGAACTTGGTAAAACAAACGGAGAATCTGCTAATGGGATTCATTCCAAGAGTGGTGATAGTGCAAGTGACGGAACTAGTGAAGGAAGTGGTGAGAATTCCCAGAATGATTCTCAATTGAAATCCGGGGAGAGGCAGGACTCTTTTGAAGATGAACCATCTCAAAATGGAAGTTCGGCTCCTCAAAACGGGGTACATAGTAGACCTCAGACACTTGTTAACCAAACTATGCCTGCCATACCTATATCTACTGCAAGTGCTCCCGGAGCAATTCCTGGTCCCACAACTAATTTAAATATAGGAATGGATTACTGGGGCACGCCAACTTCATCCGCCATTCCTGCACTGCATGGAAAGGACGAAAGAGAGCTTAAAAGACAAAGGCGGAAGCAGTCTAATAGAGAATCTGCACGCAGATCCAGGTTACGGAAGCAGGCTGAATGCGATGAACTAGCTCAGCGTGCTGACGTTTTGAAAGAAGAAAATGCCACTCTCCAAGCAGAAGTAAGCAGGATCAGGAATGAGTACGAGCAGCTACTTTCTGAGAATGCTTCCCTCAAGGAGAGACTTGGGGAGATACCTGGTGTTGCTACTCCTGGGAACGAGGATGTTAGGTCTGGCCAGAATGATCAGCATGTTACTAATGACACTCAACAAAGTCGTCAGAAGGAGGCTGTGCAGGGTGTTCATTAG 1170 0.4667 MGSSDMDKTPKEKESKTPPATSQEQSPTTGMATINPDWSNFQTYSPIPPHSFLASSPQAHPFMWGVQHVMPPYGTPPHPYVAMYPHGGIYAHPSIPPGSYPFSPFAMASPNGIADSSGNNPGTIEVGAKPPEVKEKLPVKRSKGSASGGSLNMWITGKNSELGKTNGESANGIHSKSGDSASDGTSEGSGENSQNDSQLKSGERQDSFEDEPSQNGSSAPQNGVHSRPQTLVNQTMPAIPISTASAPGAIPGPTTNLNIGMDYWGTPTSSAIPALHGKDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENATLQAEVSRIRNEYEQLLSENASLKERLGEIPGVATPGNEDVRSGQNDQHVTNDTQQSRQKEAVQGVH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5330g00013 389 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 381 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vium5330g00013 389 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 282 345 IPR004827 GO:0003700|GO:0006355
Vium5330g00013 389 MobiDBLite consensus disorder prediction 346 389 - -
Vium5330g00013 389 CDD bZIP_plant_GBF1 285 335 IPR045314 GO:0003700|GO:0006355
Vium5330g00013 389 SUPERFAMILY Leucine zipper domain 283 339 IPR046347 GO:0003700|GO:0006355
Vium5330g00013 389 Pfam bZIP transcription factor 280 342 IPR004827 GO:0003700|GO:0006355
Vium5330g00013 389 MobiDBLite consensus disorder prediction 211 241 - -
Vium5330g00013 389 Coils Coil 300 348 - -
Vium5330g00013 389 Gene3D - 283 337 - -
Vium5330g00013 389 MobiDBLite consensus disorder prediction 19 40 - -
Vium5330g00013 389 Pfam Disordered region downstream of MFMR 135 273 - -
Vium5330g00013 389 MobiDBLite consensus disorder prediction 145 201 - -
Vium5330g00013 389 MobiDBLite consensus disorder prediction 114 306 - -
Vium5330g00013 389 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 287 302 IPR004827 GO:0003700|GO:0006355
Vium5330g00013 389 SMART brlzneu 280 344 IPR004827 GO:0003700|GO:0006355
Vium5330g00013 389 MobiDBLite consensus disorder prediction 361 389 - -
Vium5330g00013 389 MobiDBLite consensus disorder prediction 1 18 - -
Vium5330g00013 389 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Vium5330g00013 389 MobiDBLite consensus disorder prediction 275 289 - -
Vium5330g00013 389 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5330g00013 Vium-Chr5330 125678 132864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5330g00013 1 353 bZIP Transcription Factor Family AT2G35530 58.398 1.04e-140 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium5330g00013 MFMR_assoc 9.3e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5330g00013 K09060 - gmx:100101912 682.945