Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5325g00001 ATGCAATCCATCAAGATTCTAGCCTGCTGGAGGATTCTTTACTGGTTTATTTTGATATTTGTAACACAACTTGCTTGTTTCTCCCAAATCTTTTATTTGGCTTCTATTGCTATCTCAGTCACTATTGTTGATGAAGCTGTAGCAGAGAACAGTGAAGCCAATGCACTGCTAAAGTGGAAGCACAGCCTTCACACATCCAGCCAAGATGTCTTGTCAACATGGAATGGTGTTACACCATGCAAATGGGATGGAATTCATTGTAACATGTACAATTCCAAGTCCATTTCCACCATAGATCTTGCAAATTATGGTCTCATAGGTACCCTTAACGCCCTCAACTTCTCAGCTTTCCCTAACCTACTCATCCTAAATATCTATAACAACTCCTTTTATGGGACCATTCCACCACAAATTGGTAACATGTCCAGAGTAAATGTTTTGAATCTTTCTGCAAATTATTTCCATGGTTCCATCCCTCAACAAGTGTGGACACTAAAGAGTTTACAAGGTCTCGATCTATTCACATGTCAATTAAGTGGAGAGATTCCTAATTCCATAGCAAACTTGTCAAACTTGACATATCTAGATTTAAGCAACAACAGTTTTTCTGGCCAGATTCCACCAGAGATTGGAAACTTGCACAAGTTGAAATATCTAGCTATTGGTAAAAATAAACTTCTCGGTTCCATTCCTCAAGAAATTGGAATGTTAACAAACCTTGCGCTCATGGATTTGTCAGAAAATTCTCTCTTTGGTACTATACCTGAAACAATAGGTAACATGAGAAATTTAAGTCAACTTTACATTTCTAACAACTCCCACCTACATGGGCCAATCCCATCCTCCATATGGAACATGTCCAAGTTAACAGTGCTCAACCTTTATGGCAATAGCCATTCTGGATCAATCCCTGCTTCCATAGAAAATTTGGGCAATTTAGATAAACTTGGACTTGATCACAACCAACTTTCAGGTCCCATTCCTTCCACGATTGGAAAGTTGACTAAGCTTACCTATTTGTTTTTAAGCTTCAACAATTTTTCTGGATCAATTCCTCCCTCTATAGGAAATTTGATCAATTTGAAAACGCTTAGTCTCGAAAGAAACAATCTCTCAGGAACAATTCCAGCCACAATTAAAAATTTGAAAAGGCTTACCAACTTAGCATTGTCCGTGAACAAACTTAATGGCAGTATTTCACAAGTCTTGAATAACAATAATAAATGGTATATTGTGTTACTTGCTGAGAATGATTTCACAGGCCACTTACCACCTCAAATTTGCTCTGCTGGGTCCCTAAGCCTCCTTAGTGCTCACCACAACCGTTTCACCGGTCCGGTGCCAGTAAGCTTGAAGAACTGTGCTAGTGTTACTAGACTCCGGTTGGATGGGAACCAATTGGAAGGAGATATATCACAAGATTTTGGTGTATATCCAAATTTGAACTACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCATCAAACTGGGGTAAGTGTCCTAATCTTGATACCCTAAAGATATCCAACAATAACATTTCTGGTGGTATACCAGTCGAACTTGCTGAGGCAACCGAACTTGGCAAGCTTCACCTTTCTTCTAACCACTTGAAGGGAAAGATTCCAAAGGAATTAGGCAATATGAAATCTTTAATTGAACTCAAGATTAGCAACAACGATCTTTCTGGAGACATTCCCAAGGAAATTGGATCACTGCAAATTCTTGAAGAATTGGATCTTGGAGATAACCAGTTGAGTGGAAAAATACCAGCAGAAGTTGTAGAGTTGCCTAAGTTACGGAAGTTAACTTTGAGCAATAATAAAATAAACGGAAATATTCCCTTGGAGTTTCGCCAACTTCAGCCTCTTGAATACCTTGATCTTAGTGGGAATTTTTTGACTGGAACAATACCAAGGCAACTTGGAGCGGTGATCAAACTAAACTGTTTGAATCTCTCTCGCAACAATCTTTCTGGAAGTATTCCATCCAGTTTTGAGGGCATGTCAAATTTGGTTTCTGTCAACATATCATACAATCGGTTAGAAGGGCCACTTCCCAAAAATGGAGCCTTTCTTAATGCTTCAATTGAATCATTGAAAAATAACACAGGTTTGTGTGGGAACGTCACTGGGTTGATGCTTTGCCCAGCCAACCGCAATGAAAGGAAGCACAAGGACATTCTTCTGATATTACTTCTCATGTTGGGTGCTCTTGCATTAATATTGTGTGCGGTGGGTGTTTCAATGTATATTCTTTGTCGAAAAGCAAGGAAGAAAGAAGCCCAAGCTAAAGGAAAAGAAGTATCAGAAAATGCATTGTCTCAAGAAGTGTTTTCCGTTTGGAGTCGTGATGGAAAAATTATGTTTGAAACTATCATTGAAGCTACCCACAATTTTAATGACGAATATCTCATAGGTGTCGGAGGACAAGGAAATGTTTACAGAGCCGAGTTCCCTTCAGGTGAGGTTTATGCGGTGAAGAAACTTCATCTAGGAACAGATGGAGAGAAGCCTAATTTTAAAGCTTTTGAGAATGAAATTCAAGCTTTGACCGAAATCAGGCACCGTAATATTGTAAAGCTATGCGGGTTTTGCTCACATCCACGATTCACATTTTTGGTTTATAAGTTCATGGAAGGGGGTAGCTTGGATCAAACCCTAAGCAATGAGAAAAAAGCATCTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGTTTTATCCTACATGCATCATGATTGCTCACCTCCAATAATCCATCGTGACATATCGAGCAAGAATGTTCTTCTTGATTCACAGTACGAAGCTCGTGTCACTGATTTTGGAACAGCTAAGATTCTAAAGCCTGGTTGCTCTTGGACGACGTTTCAAGGCACATTAGGGTATGCAGCTCCAGAGTTTGCTCAAACTATGGAAGTAACTGAGAAATGTGATGTATTCAGTTTTGGTGTGCTTTGCCTAGAAATCATCATGGGGAAACATCCGGGGGATCTCGTTTCTTCGTTGTTATCTTCATCTTCAGCAGCAATAACTCATAATTTGCTACTACTGGATGTGCTAGACCAAAGGCCTCCTCATCCTCTTAAATCAGTTGTCGGGGATGTCATTTTGGTTTCAAGCTTGGCATTTTCTTGCTTGAGTGAAAATCCAAGTTCTCGCCCAACAATGGCTGAAGTGTCCAAAATGTTAATGATGGGGAAATCCTCGTTACCAGCTCAGTTACCCATGATTAGACTTGGACAACTCCTCTAA 3273 0.396 MQSIKILACWRILYWFILIFVTQLACFSQIFYLASIAISVTIVDEAVAENSEANALLKWKHSLHTSSQDVLSTWNGVTPCKWDGIHCNMYNSKSISTIDLANYGLIGTLNALNFSAFPNLLILNIYNNSFYGTIPPQIGNMSRVNVLNLSANYFHGSIPQQVWTLKSLQGLDLFTCQLSGEIPNSIANLSNLTYLDLSNNSFSGQIPPEIGNLHKLKYLAIGKNKLLGSIPQEIGMLTNLALMDLSENSLFGTIPETIGNMRNLSQLYISNNSHLHGPIPSSIWNMSKLTVLNLYGNSHSGSIPASIENLGNLDKLGLDHNQLSGPIPSTIGKLTKLTYLFLSFNNFSGSIPPSIGNLINLKTLSLERNNLSGTIPATIKNLKRLTNLALSVNKLNGSISQVLNNNNKWYIVLLAENDFTGHLPPQICSAGSLSLLSAHHNRFTGPVPVSLKNCASVTRLRLDGNQLEGDISQDFGVYPNLNYIDLSDNKFYGQISSNWGKCPNLDTLKISNNNISGGIPVELAEATELGKLHLSSNHLKGKIPKELGNMKSLIELKISNNDLSGDIPKEIGSLQILEELDLGDNQLSGKIPAEVVELPKLRKLTLSNNKINGNIPLEFRQLQPLEYLDLSGNFLTGTIPRQLGAVIKLNCLNLSRNNLSGSIPSSFEGMSNLVSVNISYNRLEGPLPKNGAFLNASIESLKNNTGLCGNVTGLMLCPANRNERKHKDILLILLLMLGALALILCAVGVSMYILCRKARKKEAQAKGKEVSENALSQEVFSVWSRDGKIMFETIIEATHNFNDEYLIGVGGQGNVYRAEFPSGEVYAVKKLHLGTDGEKPNFKAFENEIQALTEIRHRNIVKLCGFCSHPRFTFLVYKFMEGGSLDQTLSNEKKASAFDWEKRVNVVKGVANVLSYMHHDCSPPIIHRDISSKNVLLDSQYEARVTDFGTAKILKPGCSWTTFQGTLGYAAPEFAQTMEVTEKCDVFSFGVLCLEIIMGKHPGDLVSSLLSSSSAAITHNLLLLDVLDQRPPHPLKSVVGDVILVSSLAFSCLSENPSSRPTMAEVSKMLMMGKSSLPAQLPMIRLGQLL 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5325g00001 1090 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 277 377 - -
Vium5325g00001 1090 Pfam Leucine rich repeat 336 395 IPR001611 GO:0005515
Vium5325g00001 1090 Pfam Leucine rich repeat 262 323 IPR001611 GO:0005515
Vium5325g00001 1090 Pfam Leucine rich repeat 552 611 IPR001611 GO:0005515
Vium5325g00001 1090 Pfam Leucine rich repeat 625 683 IPR001611 GO:0005515
Vium5325g00001 1090 Pfam Leucine rich repeat N-terminal domain 50 88 IPR013210 -
Vium5325g00001 1090 ProSiteProfiles Protein kinase domain profile. 801 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5325g00001 1090 FunFam Nuclear pore complex protein NUP107 49 194 - -
Vium5325g00001 1090 FunFam MDIS1-interacting receptor like kinase 2 880 1076 - -
Vium5325g00001 1090 FunFam Leucine-rich repeat receptor protein kinase MSP1 763 879 - -
Vium5325g00001 1090 Gene3D Ribonuclease Inhibitor 48 206 IPR032675 -
Vium5325g00001 1090 ProSitePatterns Tyrosine protein kinases specific active-site signature. 925 937 IPR008266 GO:0004672|GO:0006468
Vium5325g00001 1090 Gene3D Phosphorylase Kinase; domain 1 760 879 - -
Vium5325g00001 1090 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 381 1071 - -
Vium5325g00001 1090 Pfam Protein kinase domain 803 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5325g00001 1090 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 406 721 - -
Vium5325g00001 1090 Gene3D Ribonuclease Inhibitor 408 718 IPR032675 -
Vium5325g00001 1090 SMART LRR_typ_2 117 141 IPR003591 -
Vium5325g00001 1090 SMART LRR_typ_2 310 333 IPR003591 -
Vium5325g00001 1090 SMART LRR_typ_2 237 261 IPR003591 -
Vium5325g00001 1090 SMART LRR_typ_2 334 358 IPR003591 -
Vium5325g00001 1090 SMART LRR_typ_2 189 213 IPR003591 -
Vium5325g00001 1090 SMART LRR_typ_2 670 695 IPR003591 -
Vium5325g00001 1090 SMART LRR_typ_2 646 669 IPR003591 -
Vium5325g00001 1090 SMART LRR_typ_2 598 621 IPR003591 -
Vium5325g00001 1090 SMART LRR_typ_2 550 574 IPR003591 -
Vium5325g00001 1090 Pfam Leucine Rich Repeat 191 213 IPR001611 GO:0005515
Vium5325g00001 1090 SUPERFAMILY L domain-like 78 404 - -
Vium5325g00001 1090 SUPERFAMILY Protein kinase-like (PK-like) 788 1071 IPR011009 -
Vium5325g00001 1090 Gene3D Ribonuclease Inhibitor 207 300 IPR032675 -
Vium5325g00001 1090 SUPERFAMILY L domain-like 451 709 - -
Vium5325g00001 1090 Gene3D Transferase(Phosphotransferase) domain 1 880 1079 - -
Vium5325g00001 1090 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 195 262 - -
Vium5325g00001 1090 Gene3D Ribonuclease Inhibitor 301 407 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5325g00001 Vium-Chr5325 56017 59806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5325g00001 20 972 Receptor kinase-like Gene Family AT4G08850 42.857 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium5325g00001 Pkinase 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5325g00001 - - vra:106759489 1643.25