Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5323g00001 ATGGTGAAAACTAAATCAGGGCTTAAGCGGTTTTGGAACTGCTTCTGTGGTCGATCATCGGGATCCACTTCTTCTTCCTCTTCATACGACTCCTCGCACACCATCCAAAACCAACACTACATATACGATGTGTTCATCAGTTTCAGAGGTCCTGACACCCGCAACTCTTTCGTTGATCATCTCTGCTCTCATCTCCTCCGAAAGGGCATTTTCGTCTTCAAAGATGACCACCAACTACAGAAAGGAAAATCCATTTCCCCACAGCTTCTACAAGCAATTCAACTTTCACGCCTTTCTATCATTGTCTTTTCCAAAAATTATGCTTCTTCCACTTGGTGTTTAGAAGAAATGGCCGCTATAGCTTCTTGCAAACAACAATCAAGCCAAATTGTTTTCCCCATTTTCTATGATGTAGATCCATCTCATGTAAGACGTCAGAATGGGGTATACAAGAATGACTTCGTTTCACACAGATGCAAATTCCAAAAAGATTTGGACAAGGTTCTTGGATGGGAGAGGGCTATGACGGATTTGGCCAATTCAGCGGGTTGGGATGTGAGGGACAAGCCAGAGTTTGAACAGATTCAACACATTGTTCAAGCAGTAATTAAAAAATTGGGTCATAAATTCTCTGGGTTTATTGATGACCTTGTTGGGATACAACCACGCGTACAAGCATTAGAAGACAAATTAAGATTAAGCTCAAACAAAGTTCAAGTTTTAGGAGTTTGGGGAATGAATGGNTGGTGGGAAGTGATGGTGAAAACTAAATCAGGGCTTAAGCGGTTTTGGAACTGCTTCTGTGGTCGATCATCGGGATCCACTTCTTCTTCCTCTTCATACGACTCCTCGCACACCATCCAAAACCAACACTACATATACGATGTGTTCATCAGTTTCAGAGGTCCTGACACCCGCAACTCTTTCGTTGATCATCTCTGCTCTCATCTCCTCCGAAAGGGCATTTTCGTCTTCAAAGATGACCACCAACTACAGAAAGGAAAATCCATTTCCCCACAGCTTCTACAAGCAATTCAACTTTCACGCCTTTCTATCATTGTCTTTTCCAAAAATTATGCTTCTTCCACTTGGTGTTTAGAAGAAATGGCCGCTATAGCTTCTTGCAAACAACAATCAAGCCAAATTGTTTTCCCCATTTTCTATGATGTAGATCCATCTCATGTAAGACGTCAGAATGGGGTATACAAGAATGACTTCGTTTCACACAGATGCAAATTCCAAAAAGATTTGGACAAGGTTCTTGGATGGGAGAGGGCTATGACGGATTTGGCCAATTCAGCGGGTTGGGATGTGAGGGACAAGCCAGAGTTTGAACAGATTCAACACATTGTTCAAGCAGTAATTAAAAAATTGGGTCATAAATTCTCTGGGTTTATTGATGACCTTGTTGGGATACAACCACGCGTACAAGCATTAGAAGACAAATTAAGATTAAGCTCAAACAAAGTTCAAGTTTTAGGAGTTTGGGGAATGAATGGAATAGGAAAGACGACTCATGCAGCTGTCCTATATGACAAAATCTCTCATAGGTTTGATGCTTCTTGTTTCATCGAGAATGTGAACAAACTTTATAGGGATGGTGGCCATACTGCTGTTCAAAAGCAAATTATTCATCAAACTTTACGTGAAAACATAGATATGAGTAATCCTATTGAAATATCAGGGATTGTAGAAAATAGGCTACACAGGATAAAGGTCCTCATAGTTCTGGACAATGTTGATGAATTAGAGCAATTGGAAAATTTGGCCATAAAACCTAAATTGCTTTCGAAGGGAAGTAGGATGGTTATTACAACCACAGATGAGCATATTCTGAAAGCGTACGAGGGTGAAGTGTTGATACACAAGGTTTCATTATTGAATGATAAGGATGCCCGTGAATTGTTATGTAGAAAAGCCTTCAAAAGTGAAGAGCAAAGCAGTAGGTGTGCGGCTTTGATTCCTGAAGTAGTGAAATATGCCCAACGTCTTCCATTGGCAATTAGAGTGTTGGGTTCTTTCTTGTGTGATCGAGATGGTGTTCAATGGAGAGATGTGTTGAACAGATTGGAGAATAGTCCAAATAATAAAATTATGAACGTACTCCGAATAAGTGTGGATGGTCTACAACGTGAGGAAAAACAAATATTTTTACACATTGCGTGTTTCTTTAAAGGGGAAAGAGAGGATTATGTTAAGCGAATTCTAGACTGTTGTGGGTTATACCCTCATATTGGAATTCAAAGACTCGTTGAGAAATCACTCATCACTATTAGCAGTGAAGAAATTGTTATGCATGAATTGTTACAGGAATTAGGAAAGAAAATGGTTCGCGACCAATCTCCAGAGGAACCAGGATCATGGAGTAGAATATGGCTTCTTAAAGACTTCTTGCATGCCTTGAAAGCAGAAACGGTAACAAGTTACATTTTTTATTTTGAAGGAACAGAAAAGGTGAAAGCCATAGTTTTAAATAAAAAAGAAGAAATGTCAGAATGTAGTGTCGAGGGATTGTCAAGAATGAAGGAGCTTACATTACTGATATTATATCACACAAGAATTTCAGGAAGGCTGGAGTTTCTTTCAGACAGACTGCAATATCTATTGTGGCATGATTATCCTTTTGCTTCTCTCCCTCCATACTTTACAGCCTCTAATATTGTGGAATTGAATATGCCTAACAGTCGCATCAGACATTTATGGGAAGGCCGCAAGAGCTGTCCCAACTTGAAAAGGATTGATTTAAGCAACTCCAAGTACCTGAGTGAGACTCCAGATTTTTCCAGAATCGTAAAACTTGAAAGGCTAGATCTGTCTGGATGTACAAGTTTATCTTATGTCCATTCAACAATTGGACTTCTTAAGAAGCTTGCTTTCTTGAATTTACGAAATTGTTGCAATCTAGTTTTCATTGATTTTGGCTGTGTAGGGAACATGAGTTCTCTGAGAGTTATACATCTCTCGGGTTGTTCTAAACTTGAAAGCACCCCAGATTTTACAAGGGCAACACATCTTGAGTACCTTGACATGAATGAATGTACAAGTTTATCCACTATTCATGAGTCTATTGGAGTCCTTTCAAGTCTTACTTTCTTGAGTTTGAGAGGTTGTATAAAGCTTGTCAGTATACCAAATGCTATTCATTCCTTGGCATCTCTTCAAACTCTAGATTTATACGGTTGTTTTAGCCTTACGGATCTGCTACCAAAACAAGCTTCTTCATCCCATTTGAAATACTTGATTTTTCTAGACATAAGTAATTACAAACTAAAAGAAGTACCTGATGCTATTGGAGACTTAAGAAGTTTAGAAAGACTGAATCTACAGGGAAACAATTTTGTTTCAATACCTGATTCCTTCCATCAGCTTCATTGTCTAGCATATTTAAACTTGTCTCATTGTGATAAGCTCATATATTTGCCTGACCTTCCAACTGAAGGAGATACATCAGGGGGGAAGTATTTTAAAACGGTATCCGGATCTCGTGATCATAGATCAGGCTTTTATCTCTTTGATTGTCCCAAAGTGTCTTATGGTAAAGTTGAGTTCGACAGACTTGAACGCTTCTTCCACCTAATTAAGGTTCACATTCTACAACCTTCTCTTTTTGTCTTTGGCTAA 3621 0.3902 MVKTKSGLKRFWNCFCGRSSGSTSSSSSYDSSHTIQNQHYIYDVFISFRGPDTRNSFVDHLCSHLLRKGIFVFKDDHQLQKGKSISPQLLQAIQLSRLSIIVFSKNYASSTWCLEEMAAIASCKQQSSQIVFPIFYDVDPSHVRRQNGVYKNDFVSHRCKFQKDLDKVLGWERAMTDLANSAGWDVRDKPEFEQIQHIVQAVIKKLGHKFSGFIDDLVGIQPRVQALEDKLRLSSNKVQVLGVWGMNGWWEVMVKTKSGLKRFWNCFCGRSSGSTSSSSSYDSSHTIQNQHYIYDVFISFRGPDTRNSFVDHLCSHLLRKGIFVFKDDHQLQKGKSISPQLLQAIQLSRLSIIVFSKNYASSTWCLEEMAAIASCKQQSSQIVFPIFYDVDPSHVRRQNGVYKNDFVSHRCKFQKDLDKVLGWERAMTDLANSAGWDVRDKPEFEQIQHIVQAVIKKLGHKFSGFIDDLVGIQPRVQALEDKLRLSSNKVQVLGVWGMNGIGKTTHAAVLYDKISHRFDASCFIENVNKLYRDGGHTAVQKQIIHQTLRENIDMSNPIEISGIVENRLHRIKVLIVLDNVDELEQLENLAIKPKLLSKGSRMVITTTDEHILKAYEGEVLIHKVSLLNDKDARELLCRKAFKSEEQSSRCAALIPEVVKYAQRLPLAIRVLGSFLCDRDGVQWRDVLNRLENSPNNKIMNVLRISVDGLQREEKQIFLHIACFFKGEREDYVKRILDCCGLYPHIGIQRLVEKSLITISSEEIVMHELLQELGKKMVRDQSPEEPGSWSRIWLLKDFLHALKAETVTSYIFYFEGTEKVKAIVLNKKEEMSECSVEGLSRMKELTLLILYHTRISGRLEFLSDRLQYLLWHDYPFASLPPYFTASNIVELNMPNSRIRHLWEGRKSCPNLKRIDLSNSKYLSETPDFSRIVKLERLDLSGCTSLSYVHSTIGLLKKLAFLNLRNCCNLVFIDFGCVGNMSSLRVIHLSGCSKLESTPDFTRATHLEYLDMNECTSLSTIHESIGVLSSLTFLSLRGCIKLVSIPNAIHSLASLQTLDLYGCFSLTDLLPKQASSSHLKYLIFLDISNYKLKEVPDAIGDLRSLERLNLQGNNFVSIPDSFHQLHCLAYLNLSHCDKLIYLPDLPTEGDTSGGKYFKTVSGSRDHRSGFYLFDCPKVSYGKVEFDRLERFFHLIKVHILQPSLFVFG 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5323g00001 1206 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 294 966 IPR044974 GO:0006952
Vium5323g00001 1206 Gene3D - 39 212 IPR035897 -
Vium5323g00001 1206 Gene3D - 291 464 IPR035897 -
Vium5323g00001 1206 Pfam TIR domain 294 461 IPR000157 GO:0007165
Vium5323g00001 1206 Pfam TIR domain 42 209 IPR000157 GO:0007165
Vium5323g00001 1206 Pfam NB-ARC domain 476 696 IPR002182 GO:0043531
Vium5323g00001 1206 SUPERFAMILY Toll/Interleukin receptor TIR domain 33 184 IPR035897 -
Vium5323g00001 1206 Gene3D - 466 621 IPR027417 -
Vium5323g00001 1206 ProSiteProfiles TIR domain profile. 292 458 IPR000157 GO:0007165
Vium5323g00001 1206 Pfam Leucine rich repeat 1083 1135 IPR001611 GO:0005515
Vium5323g00001 1206 SUPERFAMILY "Winged helix" DNA-binding domain 696 802 IPR036390 -
Vium5323g00001 1206 Gene3D Ribonuclease Inhibitor 797 971 IPR032675 -
Vium5323g00001 1206 FunFam Disease resistance protein (TIR-NBS-LRR class) 38 208 - -
Vium5323g00001 1206 SUPERFAMILY Toll/Interleukin receptor TIR domain 285 436 IPR035897 -
Vium5323g00001 1206 Gene3D Ribonuclease Inhibitor 1072 1161 IPR032675 -
Vium5323g00001 1206 Gene3D Ribonuclease Inhibitor 975 1071 IPR032675 -
Vium5323g00001 1206 Gene3D - 627 714 IPR042197 -
Vium5323g00001 1206 SUPERFAMILY L domain-like 834 1142 - -
Vium5323g00001 1206 ProSiteProfiles Leucine-rich repeat profile. 1102 1123 IPR001611 GO:0005515
Vium5323g00001 1206 ProSiteProfiles TIR domain profile. 40 206 IPR000157 GO:0007165
Vium5323g00001 1206 FunFam Disease resistance protein (TIR-NBS-LRR class) 290 460 - -
Vium5323g00001 1206 PRINTS Disease resistance protein signature 661 675 - -
Vium5323g00001 1206 PRINTS Disease resistance protein signature 977 993 - -
Vium5323g00001 1206 PRINTS Disease resistance protein signature 567 581 - -
Vium5323g00001 1206 PRINTS Disease resistance protein signature 492 507 - -
Vium5323g00001 1206 SMART till_3 293 433 IPR000157 GO:0007165
Vium5323g00001 1206 SMART till_3 41 181 IPR000157 GO:0007165
Vium5323g00001 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 720 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5323g00001 Vium-Chr5323 1080 9948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5323g00001 42 254 WRKY Transcription Factor Family AT4G12020 25.000 6.39e-11 65.5