Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5322g00007 ATGTTGGTCACTACTGAGGACAAGTCTCATGTTGTCGTTGACATACACAGTGATGGCTGTTGTCAACGGAGCTCGGCCACCGATGAGGGGTGTTCTGACGCCACCGACCGGTCGCATGAGGAGCAAAGGTCTTCCCATGATCCTGGCTCTGAGATAGTAGGAGTGTGTGAGAAGGAGAGAAGATCCTCTGCTTCAGAGTGTTCGGTGGAGGTGGATCTGGAGGAGGATTCAGTCCCCGAAGTTAAGGTGCATTTGGATAAAGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGTACTCCCATTGAGCTGGGATGCTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAAAACATGTGAAATCTGTGGATCAATTGCACGCAATGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAATGGAATGAGGGAAATGATGGTTCGACGGCAGCACAATCTGGAACCGCAGGAGCCACAGAAAATAGAAATTTCTGGCAGGGTCATCGTTTTTTGAACTTCCTGCTAGCATGTATGGTGTTTGCCTTTGTGATATCATGGCTCTTTCACTTTAATGTACCCTCTTGA 648 0.4784 MLVTTEDKSHVVVDIHSDGCCQRSSATDEGCSDATDRSHEEQRSSHDPGSEIVGVCEKERRSSASECSVEVDLEEDSVPEVKVHLDKVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEIQMTEQWNEGNDGSTAAQSGTAGATENRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5322g00007 215 ProSiteProfiles Zinc finger RING-CH-type profile. 84 150 IPR011016 GO:0008270
Vium5322g00007 215 Pfam RING-variant domain 92 143 IPR011016 GO:0008270
Vium5322g00007 215 SUPERFAMILY RING/U-box 89 146 - -
Vium5322g00007 215 MobiDBLite consensus disorder prediction 30 52 - -
Vium5322g00007 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 152 IPR013083 -
Vium5322g00007 215 SMART ringv_2 91 144 IPR011016 GO:0008270
Vium5322g00007 215 MobiDBLite consensus disorder prediction 22 52 - -
Vium5322g00007 215 PANTHER ZINC FINGER, RING-CH-TYPE 17 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5322g00007 Vium-Chr5322 41574 44965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5322g00007 32 215 C3H Transcription Factor Family AT5G05830 63.441 1.19e-75 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5322g00007 - - gmx:100818979 353.214