Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5322g00001 ATGGTTAAAGGACGCCAAGGAGAACGTGTTAGACTTTATGTCAGGGGCTCAATTCTTGGATACAAGAGGTCCAAGTCAAATCAGTACCCAAATACTTCTCTCATCCAGATTGAGAATGTAAACTCCAAGGAAGAAGTTGCGTGGTACGCTGGGAAGCGCATGGCTTACATTTACAAAGCCAAGGTAAAGAAGAACGGTAGCCACTATCGATGCATTTGGGGTAAGGTCACCAGACCTCATGGTAACAGTGGTGTCGTTAGAGCTAAGTTCAAGTCAAATCTGCCGCCAAGATCGATGGGAGCAAGGGTGAGAGTGTTTATGTATCCAAGCAATATATGA 339 0.4484 MVKGRQGERVRLYVRGSILGYKRSKSNQYPNTSLIQIENVNSKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5322g00001 112 SUPERFAMILY Translation proteins 12 106 IPR009000 -
Vium5322g00001 112 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 14 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vium5322g00001 112 FunFam 60S ribosomal protein L35a 7 112 - -
Vium5322g00001 112 ProSitePatterns Ribosomal protein L35Ae signature. 74 95 IPR018266 GO:0003735|GO:0005840|GO:0006412
Vium5322g00001 112 Gene3D translation elongation factor selb, chain A, domain 4 6 112 IPR038661 -
Vium5322g00001 112 Pfam Ribosomal protein L35Ae 12 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vium5322g00001 112 PANTHER 60S RIBOSOMAL PROTEIN L35A 2 112 IPR001780 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5322g00001 Vium-Chr5322 9 2637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5322g00001 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G07070 89.286 8.77e-74 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5322g00001 K02917 - gmx:100499746 228.409