Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5321g00033 ATGGTGGAAGTGAAGCTTGTAGGGTTGAGCTTGTTGTGGTTGTGTTCATGGTGGAGCTTAGAGGGCGTAGAAGGAGACCCTCAACTCTTTCTACTGAAATGGGATTGCAGCGGATTCATTGCACCCAACTTATCCAACTTCAACAAAAACCTTAACGCAAGTTTTGCAGATCTGCGAGATCAGCTCAGCAACCAAAGGAAGCACTTTGCCACTGCACAAGCAACCGCCGGAACAGATCCTGTCTATGCTATGTTTCAGTGCAGAAACTACCTCTCCGACACTGACTGCGCCGCCTGCTTATCCGCCGCCGTCACCAAAATTCGCAACTGCTCCGCCGGAGCCAACGGTGCCCGTGTCGTTTATGACGGTTGCTTCCTCAGGTACGAGAGCAACGACTTCTTCGACCAGATCTTTTCTCGCAGCAGCATACTGTGTGGAAATCAGACTGCAGACGGAAGCACTGATTTTGGCGCAGTTGGAGAACAAGTGCTGATAGATCTACGAATCGGAACACCCAAAATCAGAGGCTACTTTGCAGCCACCAAAACAAAAGTGGCTGGTGGTGCAATCTATGCCTTTGCACAATGTGCTGAAACTCTCTCACAAGACACTTGTTTGGATTGTTTGTCAATTGAACAGAGCAGTGTACAAGGTTGTCTTCCCAGTACTGAAGGTAGAGCATTCGACCCTGGCTGCTTTATGAGATACTCAGAGACACCCTTCTTTGCTGATAACCAAACCATTGACATCAGTCCCTTCTTAAAACAAGGAGGAGGAGGAGGAGGAGGTGGTTCAAGCAAGAAGTGGATTATTATTGGTGGTTGTGTTGGAGGTGCACTTCTTGTTGTGATCCTTATTTCATTATTTCCCTGGCATAAAAGATCGCAAAGTCCCAAGAGAGTTCCCACAAATAACGTTTTGGGAGCATCTGAGTTGAAAGGTGCAACCAAGTTCAAGTATAGTGAATTGAAAGCTGCAACAAGAAATTTTAGTGAGAAAAACATACTGGGAGAAGGAGGCTTTGGCGCTGTATACAAGGGGACAATGAAGAATGGAAAAGTTGTTGCAGTCAAAAAATTATTTTCAGGAAATTCCAGCGAGATAGATGACAATTTTGAAAGTGAAGTAACGCTTGTAAGTAATGTTCATCACAGAAATCTGGTTCGACTCCTTGGATGTTGCAGCAAAGGCCAAGAAAGAATCCTTGTTTATGAATACATGGCAAACAACAGTCTTGACAAATTCTTATTTGGTAACAGAAAAGGTTCACTCAACTGGAAACAACGCTATGAAATAGTTTTGGGCACAGCAAGGGGATTGGCCTATCTACATGAGGAATTCTACGTGTCTATCATACATAGAGATATTAAGAGTGGCAATATCCTCTTGGATGGACAGCTTCAACCCAAAATTTCTGATTTTGGTTTGGTGAAGCTCCTACCAGGGGACCAATCCCATCTCAGAACAAAAGTTGCAGGAACATTGGGATACACAGCACCGGAGTATGTACTCCATGGTCAGTTATCAAAAAAGGCTGATACATACAGCTATGGAATTGTAGTACTTGAAATCGTAAGTGGTCAAAGGTGTACTGATGTGAAGAGTGTCGATGGTAGCCATGAATACCTTCTTCGACGAGCATGGGACTTGTATGAGAAAGGCATGGAGTTGGAGTTGGTGGACAAAAGCTTAGGCCCTAATAGCTATGATATAGAAGAATTGAAAAAAGTTATAGGCATTGCTTTGTTGTGCACTCAACCATCGGCTGGTATGAGACCAGCTATGTCTGAAGTAGTGGTGCTGCTCAGCAGCAATGACGCTCTTGAGGATATGAGACCTTCAATGCCTATCTTTATTGAATCGAATGGAAGACCCCCAAGAGATATCTCTGCCTCCACTGCTTCCTCTGTGTCTAATGCCAGTGCTTCCAATTCTATAGTACCTGCTAGATGA 1953 0.4434 MVEVKLVGLSLLWLCSWWSLEGVEGDPQLFLLKWDCSGFIAPNLSNFNKNLNASFADLRDQLSNQRKHFATAQATAGTDPVYAMFQCRNYLSDTDCAACLSAAVTKIRNCSAGANGARVVYDGCFLRYESNDFFDQIFSRSSILCGNQTADGSTDFGAVGEQVLIDLRIGTPKIRGYFAATKTKVAGGAIYAFAQCAETLSQDTCLDCLSIEQSSVQGCLPSTEGRAFDPGCFMRYSETPFFADNQTIDISPFLKQGGGGGGGGSSKKWIIIGGCVGGALLVVILISLFPWHKRSQSPKRVPTNNVLGASELKGATKFKYSELKAATRNFSEKNILGEGGFGAVYKGTMKNGKVVAVKKLFSGNSSEIDDNFESEVTLVSNVHHRNLVRLLGCCSKGQERILVYEYMANNSLDKFLFGNRKGSLNWKQRYEIVLGTARGLAYLHEEFYVSIIHRDIKSGNILLDGQLQPKISDFGLVKLLPGDQSHLRTKVAGTLGYTAPEYVLHGQLSKKADTYSYGIVVLEIVSGQRCTDVKSVDGSHEYLLRRAWDLYEKGMELELVDKSLGPNSYDIEELKKVIGIALLCTQPSAGMRPAMSEVVVLLSSNDALEDMRPSMPIFIESNGRPPRDISASTASSVSNASASNSIVPAR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5321g00033 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Vium5321g00033 650 ProSiteProfiles Gnk2-homologous domain profile. 138 241 IPR002902 -
Vium5321g00033 650 FunFam Cysteine-rich receptor-like protein kinase 2 140 241 - -
Vium5321g00033 650 Coils Coil 48 68 - -
Vium5321g00033 650 SUPERFAMILY Protein kinase-like (PK-like) 312 602 IPR011009 -
Vium5321g00033 650 Gene3D - 139 241 IPR038408 -
Vium5321g00033 650 Gene3D - 31 133 IPR038408 -
Vium5321g00033 650 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Vium5321g00033 650 ProSitePatterns Protein kinases ATP-binding region signature. 336 359 IPR017441 GO:0005524
Vium5321g00033 650 MobiDBLite consensus disorder prediction 626 650 - -
Vium5321g00033 650 Pfam Protein kinase domain 331 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5321g00033 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 630 - -
Vium5321g00033 650 Gene3D Transferase(Phosphotransferase) domain 1 407 614 - -
Vium5321g00033 650 FunFam Cysteine-rich receptor-like protein kinase 2 407 610 - -
Vium5321g00033 650 ProSiteProfiles Protein kinase domain profile. 330 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5321g00033 650 Gene3D Phosphorylase Kinase; domain 1 303 406 - -
Vium5321g00033 650 CDD STKc_IRAK 336 599 - -
Vium5321g00033 650 MobiDBLite consensus disorder prediction 619 650 - -
Vium5321g00033 650 Pfam Salt stress response/antifungal 153 238 IPR002902 -
Vium5321g00033 650 Pfam Salt stress response/antifungal 42 130 IPR002902 -
Vium5321g00033 650 SMART serkin_6 330 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5321g00033 650 FunFam Cysteine-rich receptor-like protein kinase 2 294 406 - -
Vium5321g00033 650 FunFam Cysteine-rich receptor-like protein kinase 2 28 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5321g00033 Vium-Chr5321 226167 229978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5321g00033 11 645 Receptor kinase-like Gene Family AT1G70520 38.272 8.78e-125 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium5321g00033 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5321g00033 - - var:108341533 1063.91