Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5321g00032 ATGCTGAAACTTGAGCTACTGGTCTTAATAACCTTGATATGGTGGAGCTCTGATAATATTCATGCATATGGTGCAGTTGAAAATATGCAGACAAATCTACTAAGCAAGGGGTGCAGCGCATACAACGCATCCAACTTGGGTAGCTTCTTTGCCAATATCAATGAAACTTTTGCAGGCCTCAGAGCACAAATTAGCAGTGATAAGAACAAGCATTTTGCCATAGAAGACAAAGCCAGGGGAGAGGTGATCACCTATGCTATGTTTCAATGCAGAAACTATCTCTCCAAAACTGAATGTCTTTCTTGCTTCGACACTGCCACCTCCGAAATCCGCAACTGCTCTGCTGCTAATGGCGCCAGAATCACATACGACTCCTGCTTCCTCAGGTATGAGAGCGAGAGGTTCTACGATGAAACCAATGAACCTGGCGGTGGAGTATCATGTGGGAACACGAGTTCAACTGTCACTGGTTTTAAAGTAGCTGCACAACCGGTGTTAATGGAGCTCCAGCAAGCAACACCCAAAATTAAAGGTTTTTATGCGGCTACTAAGACACTGGTTGCTGGTGGTAGTGCAATTTATGCCGTTTCACAGTGTGTTGAAACGGCCATGAAGACTAGTTGTCTGAACTGCCTACAAGTTGCACAGGACAACTTACAACGTTGTCTTCCCAACACAGATGGGACAGCATATGATGCTGGCTGTTTTATGAGATACTCCACCACACCTTTGTTTGCTGATAATCAGACTATTGATATTGCACCCTTTTTAAAACAAGGTTCAACGAAAAAGTGGAGTATTATAGGTGGTGGTGTTGTTGGAGCTGCTCTTCTGCTCCTTCTGTTGTTTGCTTGGATATGGTTTAGAAAATCTAAGGGGGTTCAAAGAGGTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTACGTACAAATATAATGATTTGAAAGCTGCAACAAAAAAGTTCAGTGCTGAAAACAAACTTGGGGAAGGAGGTTTTGGAGCTGTATACAAGGGTACACTGAAAAATGGAAAAGTTGTTGCTGTAAAAAAACTAGTTTTAGGGAAATCAAGCAAGATGAAGGATGATTTTGAAGGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGGAATCTAGTTAGACTTCTTGGTTGCTGCAGCAAAGGCCAAGAGAGAATCTTGGTTTATGAGTATATGGCAAATAGCAGTCTTGACAGATTCTTATTCGGTAACAGAAAAGGCTTCCTCAGTTGGAAACAACGCTATAATATAATTTTAGGCACAGCAAAGGGACTAGCATATCTACATGAGGAATTCCACGTGTCCATCATACACAGAGATATCAAGACTGCTAACATCCTGTTAAATGATGATCTTCAGCCAAAAATTGCTGACTTTGGGTTGGCAAGGCTTCTCCCAGAGGATTGTTCACATCTCAGCACAAAATTTGCAGGAACATTGGGATACACAGCTCCTGAGTATGCAATGCATGGTCAATTATCAGAAAAGGCTGATACCTACAGCTTCGGTATTGTAGTGTTAGAAATCATAAGTGGTCAAAAGAGTACTGATCTGAAGGGTGATGAGGAGAGCAGTGAATATCTTCTTCAACGATCATGGAAACTGTACGAGAGAGGGTCTCACCTGGAGCTGTTGGAAGAGGGCATTGACCCTGATGAATATGATGCGGAAGAAGTGAAGAGAATAATAGAAATTGCTTTGTTATGCACTCAAGCTACAGCTGCAGCGAGGCCAACAATGTCTGAAGTAGTAGTATTACTCAAAAGCAGGAACTCAGTGGAGCACCTCCGACCAACTATGCCTGTGTTTGTTGGAACGAATGTGATGACTCGGGAAGGCAACTCTACAAGTTCATCCAATGCTAATGCTTCCATTTCTATTGTATCAGCTCGATGA 1920 0.4229 MLKLELLVLITLIWWSSDNIHAYGAVENMQTNLLSKGCSAYNASNLGSFFANINETFAGLRAQISSDKNKHFAIEDKARGEVITYAMFQCRNYLSKTECLSCFDTATSEIRNCSAANGARITYDSCFLRYESERFYDETNEPGGGVSCGNTSSTVTGFKVAAQPVLMELQQATPKIKGFYAATKTLVAGGSAIYAVSQCVETAMKTSCLNCLQVAQDNLQRCLPNTDGTAYDAGCFMRYSTTPLFADNQTIDIAPFLKQGSTKKWSIIGGGVVGAALLLLLLFAWIWFRKSKGVQRGDILGATELKGPVTYKYNDLKAATKKFSAENKLGEGGFGAVYKGTLKNGKVVAVKKLVLGKSSKMKDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGNRKGFLSWKQRYNIILGTAKGLAYLHEEFHVSIIHRDIKTANILLNDDLQPKIADFGLARLLPEDCSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSFGIVVLEIISGQKSTDLKGDEESSEYLLQRSWKLYERGSHLELLEEGIDPDEYDAEEVKRIIEIALLCTQATAAARPTMSEVVVLLKSRNSVEHLRPTMPVFVGTNVMTREGNSTSSSNANASISIVSAR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5321g00032 639 FunFam Cysteine-rich receptor-like protein kinase 2 30 135 - -
Vium5321g00032 639 SUPERFAMILY Protein kinase-like (PK-like) 311 623 IPR011009 -
Vium5321g00032 639 ProSiteProfiles Gnk2-homologous domain profile. 31 135 IPR002902 -
Vium5321g00032 639 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524
Vium5321g00032 639 Pfam Salt stress response/antifungal 42 132 IPR002902 -
Vium5321g00032 639 Pfam Salt stress response/antifungal 153 241 IPR002902 -
Vium5321g00032 639 Pfam Protein tyrosine and serine/threonine kinase 325 593 IPR001245 GO:0004672|GO:0006468
Vium5321g00032 639 FunFam Cysteine-rich receptor-like protein kinase 2 143 244 - -
Vium5321g00032 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Vium5321g00032 639 Gene3D Transferase(Phosphotransferase) domain 1 400 607 - -
Vium5321g00032 639 CDD STKc_IRAK 329 596 - -
Vium5321g00032 639 Gene3D Phosphorylase Kinase; domain 1 293 399 - -
Vium5321g00032 639 Gene3D - 146 243 IPR038408 -
Vium5321g00032 639 Gene3D - 29 135 IPR038408 -
Vium5321g00032 639 ProSiteProfiles Gnk2-homologous domain profile. 140 244 IPR002902 -
Vium5321g00032 639 MobiDBLite consensus disorder prediction 619 639 - -
Vium5321g00032 639 SMART serkin_6 323 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5321g00032 639 FunFam Cysteine-rich receptor-like protein kinase 2 289 399 - -
Vium5321g00032 639 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 85 625 - -
Vium5321g00032 639 FunFam Cysteine-rich receptor-like protein kinase 2 400 603 - -
Vium5321g00032 639 ProSiteProfiles Protein kinase domain profile. 323 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5321g00032 Vium-Chr5321 215854 218883 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5321g00032 38 637 Receptor kinase-like Gene Family AT1G70520 36.791 4.88e-124 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium5321g00032 PK_Tyr_Ser-Thr 7.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5321g00032 - - vra:106775622 1151.73