Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5321g00031 ATGGTGGTGCGAGTGCATCTCAGTTCCCTCCTACCCTTAACTGTGTTGATCTTATTATGGAGCCTTGAGGGTGCCCTAGGAGACCCTCAGATTCTTCTGCTCAACAAAGGTTGCAGCCAATACAACGCCACGGATTTGTCCACTTTCAATCAAAATCTCAACGCAACTTTGAATGATCTCAGAGTTCAAGTTACCAACCAAAGCAAGCACTTTGCCACGGCTCAAGAAGCCAGAGGACAAGACCCTGTCTATGCCATGTTCCAATGTAGAAACTACCTCTCTACCACTGACTGCGCCGCCTGCTTCGCCGCCGCCGCCGCCCAAATCCGCAACTGCTCCGCCGGGGCTAACGGTGCCCGTGTCATCTATGACGGTTGCTTCCTCAGGTATGAGAGCGCCGGCTTCTTTGACCAGACAACTTTGGCTGGGAACAGTATGATGTGTGGAAATCAGACAGCAGTTGGAGCCACTGATTTGAATACAACTGCACAGCAAGTGCTGAAGGATCTGCAAATTGCAACCCCCAAAATCACTGGTTTCTTTGCAGCTACCAAGACTCAACTGGCTGGTGCTGCAATCTATGCCATTGCACAGTGTGCTCAAACTGTATCGGAGAGTGGTTGTCTGGATTGCCTCACAGTTGGATACAACAACATTGAAGTTTGTTTACCCAATACAGAAGGCAGAGCATTTGATGCTGGATGTTTTATGAGATACTCAGAGACAGCCTTTTTTGCTGATAACCAGACAATCGATATCACACCCTTCTTGCAACAAGGGAGTTCAAGCAAAAAGGGAGCCATTATTGGTGGGGTTGTTGGAGGTGTGGCTTTGATTGTGATCCTCCTTGCACTAATTGCCTTGCTAAGATGGTACAAGAAACCCAAGAAGGTTCGAAGAGGTGACATATTGGGAGCAACTGACTTGAAAGGTCCAGTGTCCTACAGGTATAAGGATTTGAAGGCTGCAACAAAAAATTTCAGTGAGGAAAATAAACTGGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAAATGGGAAGATAGTTGCAGTGAAGAAATTAATTTTAGGCCCATCAGGGAAGATCGATGATCAATTTGAAAGTGAAGTGAAGCTTATAAGCAATGTTCATCACAGGAATCTGGTTCGACTCCTTGGATGTTGCAGCAAAGGCCAAGAAAGAATCCTTGTTTATGAATACATGGCAAATAAAAGCTTGGATAGATTCTTATTCGGTGAAGTAAAGGATCCCCTCAACTGGAAACAAAGATATGATATAATTTTAGGCACAGCAAAGGGTTTGGCCTATCTGCATGAGGATTTCCACGTTTGCATCATACACAGGGATATAAAGACTAGCAATATCCTCTTGGATGATGAAATGCAACCAAGAATTGCTGATTTTGGGTTGGCAAGACTTCTACCAGAGGACCAATCTCATCTCAGTACAAGATTTGCAGGAACATTAGGATACACAGCACCTGAGTATGCACTCCATGGTCAGTTATCAGAGAAGGCCGATGCCTACAGCTTTGGTGTTGTACTCCTAGAAATCGTAAGTGGCCAAAAGAATAGTGAATTGAGGACAGATGCTAATGGTGAATTCCTCCTTCAAAGGGCTTGGAAACTGTACGAGGAAGACAGGCATTTGGAGTTGGTTGACAAGAAATTGGATGGTGAAGAGTACGACGTAGAAGAAGTGAAGAAGGTGATGGAGATTGCTTTGCTTTGCATTCAAGCATCAGCTGGTGCAAGACCAACAATGTCTGAAGTAGTAGCCTCACTCAAAGGCAATAATTCACTGGGGCAAAATAGGCCCTCTATGCCTGTATTTGTTGAATCTAACTTCAGGACTCGGCCAGCTGACATCTCTACCTCAACTGCTTCCTCTACTTCTAATGCTACTGCTTCCATTTCTACGCTCTCAGCTCGATGA 1944 0.4501 MVVRVHLSSLLPLTVLILLWSLEGALGDPQILLLNKGCSQYNATDLSTFNQNLNATLNDLRVQVTNQSKHFATAQEARGQDPVYAMFQCRNYLSTTDCAACFAAAAAQIRNCSAGANGARVIYDGCFLRYESAGFFDQTTLAGNSMMCGNQTAVGATDLNTTAQQVLKDLQIATPKITGFFAATKTQLAGAAIYAIAQCAQTVSESGCLDCLTVGYNNIEVCLPNTEGRAFDAGCFMRYSETAFFADNQTIDITPFLQQGSSSKKGAIIGGVVGGVALIVILLALIALLRWYKKPKKVRRGDILGATDLKGPVSYRYKDLKAATKNFSEENKLGEGGFGDVYKGTLKNGKIVAVKKLILGPSGKIDDQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANKSLDRFLFGEVKDPLNWKQRYDIILGTAKGLAYLHEDFHVCIIHRDIKTSNILLDDEMQPRIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYALHGQLSEKADAYSFGVVLLEIVSGQKNSELRTDANGEFLLQRAWKLYEEDRHLELVDKKLDGEEYDVEEVKKVMEIALLCIQASAGARPTMSEVVASLKGNNSLGQNRPSMPVFVESNFRTRPADISTSTASSTSNATASISTLSAR 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5321g00031 647 MobiDBLite consensus disorder prediction 625 647 - -
Vium5321g00031 647 FunFam Cysteine-rich receptor-like protein kinase 2 30 135 - -
Vium5321g00031 647 ProSiteProfiles Protein kinase domain profile. 327 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5321g00031 647 SMART serkin_6 327 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5321g00031 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 84 634 - -
Vium5321g00031 647 ProSiteProfiles Gnk2-homologous domain profile. 31 135 IPR002902 -
Vium5321g00031 647 CDD STKc_IRAK 333 600 - -
Vium5321g00031 647 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Vium5321g00031 647 Gene3D - 31 135 IPR038408 -
Vium5321g00031 647 Gene3D - 142 244 IPR038408 -
Vium5321g00031 647 Pfam Protein tyrosine and serine/threonine kinase 330 598 IPR001245 GO:0004672|GO:0006468
Vium5321g00031 647 SUPERFAMILY Protein kinase-like (PK-like) 312 619 IPR011009 -
Vium5321g00031 647 ProSiteProfiles Gnk2-homologous domain profile. 141 244 IPR002902 -
Vium5321g00031 647 FunFam Cysteine-rich receptor-like protein kinase 2 404 606 - -
Vium5321g00031 647 Gene3D Phosphorylase Kinase; domain 1 296 403 - -
Vium5321g00031 647 Gene3D Transferase(Phosphotransferase) domain 1 404 611 - -
Vium5321g00031 647 Pfam Salt stress response/antifungal 38 132 IPR002902 -
Vium5321g00031 647 Pfam Salt stress response/antifungal 158 241 IPR002902 -
Vium5321g00031 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Vium5321g00031 647 FunFam Cysteine-rich receptor-like protein kinase 2 143 244 - -
Vium5321g00031 647 FunFam Cysteine-rich receptor-like protein kinase 2 293 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5321g00031 Vium-Chr5321 200902 205899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5321g00031 5 647 Receptor kinase-like Gene Family AT1G70520 36.600 1.18e-127 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium5321g00031 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5321g00031 - - vra:106775622 1096.65