Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5321g00028 ATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGATTAGAAGTAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCGAGCTTGCCACCCCAGTTAATTTGTCAACTGCACAATGTTACAATGCATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACATTGCAGCCGTTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAATTGGGCATTCCCAGTAAGCAGCCATCAAATTATTTTTGCAAGACATTAACAGCCAGTGATACCAGTACACATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCAGCACAGGAACTGATTGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGGCATATTTTTCGGGGACAGCCGAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTCGTGGCTGGAGATTCTGTGCTTTTCATTTGGAATGAGAAGAATCAGCTTCTTTTGGGAATCCGCCGTGCCAATAGACCACAAACTGTAATGCCATCATCGGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCTGCCCATGCTGCAGCGACTAATAGCTGTTTTACCGTGTTTTATAATCCGAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAGTATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCGAATTCTCACTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCTATGTACCCGTCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGAGATGAAGCAAGTAATGGGCTGATGTGGCTGAGGGGTGGAGCTGTAGACCAAGGTCTCAATTCGCTAAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGAATGGATCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGGTTGCAGAATCTAGGCAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAACAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAATTCTCCTTTGCAACTTCAGTCGCAGCAATCAGTTCAACAATCTGTATCTTCTAACATGCTGCAGCCACAAGCCCATGTACTGACAGAGAACCTCTCTCAGCACCTACTTCAGAAACCGCACAACAATCAAGAAGTCCAAGCGCAACAGCAGCAGCATTCTTATCAAGAATCGCTCTTAATTCCAAGTGATCAGCTCCATCAGAGACAACACTCTGGCGTTCCTTCACCATCGTATTCAAAACCAGATTTCTTGGATTCGAGCATGAAGTTCCCTGTTTCAGTTTCTCCTGGACAAAACATGCTTAGTTCACTTTGTCCTGAAGGAAGTGGAAATCTCTTGAATTTATCAAGGAGTGGTCCGTCCTTGCTGAGTGAACAGCAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCTTATGGAAGCACTGTGTCGCAGACACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATCTTAACTCAGATGCCCAAAATTCAACTCTATTTGGTGTCAATATTGATTCATCTGGCCTTCTTCTTCCCACCACAGTCCCTGGTTACAGCACCTCATCTGCGGATACTAATTCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCTGTTTGGTTGCATGCAAGATTCGTCAGAGTTGTTGCAAAGCGCAGGGCATGTTGATCCACAAAACCAGACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCTGTTGGGCGCTCACTTGACATATCCCGGTTCAGCAGCTATCATGAACTGCGTGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGCAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTGAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCAGTGGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTCAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGAATACTGA 2520 0.4607 MKLSTSGLGQQGLEVGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEASNGLMWLRGGAVDQGLNSLNFQGAGMLPWMQQRMDPTLLGSDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSNSPLQLQSQQSVQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHSYQESLLIPSDQLHQRQHSGVPSPSYSKPDFLDSSMKFPVSVSPGQNMLSSLCPEGSGNLLNLSRSGPSLLSEQQWTQKYAPVQVNAYGSTVSQTQYSGKDSAMVLPHLNSDAQNSTLFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSLFGCMQDSSELLQSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5321g00028 839 FunFam Auxin response factor 126 230 - -
Vium5321g00028 839 Gene3D - 292 364 - -
Vium5321g00028 839 Gene3D - 126 229 IPR015300 -
Vium5321g00028 839 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium5321g00028 839 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vium5321g00028 839 SMART B3_2 128 230 IPR003340 GO:0003677
Vium5321g00028 839 MobiDBLite consensus disorder prediction 817 831 - -
Vium5321g00028 839 FunFam Auxin response factor 292 364 - -
Vium5321g00028 839 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Vium5321g00028 839 Gene3D - 709 802 - -
Vium5321g00028 839 SUPERFAMILY CAD & PB1 domains 708 787 - -
Vium5321g00028 839 ProSiteProfiles PB1 domain profile. 713 797 IPR000270 GO:0005515
Vium5321g00028 839 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vium5321g00028 839 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vium5321g00028 839 Pfam AUX/IAA family 709 797 IPR033389 -
Vium5321g00028 839 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 802 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium5321g00028 839 MobiDBLite consensus disorder prediction 470 496 - -
Vium5321g00028 839 FunFam Auxin response factor 708 802 - -
Vium5321g00028 839 MobiDBLite consensus disorder prediction 817 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5321g00028 Vium-Chr5321 182881 189902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5321g00028 98 805 B3 DNA Binding Superfamily AT5G37020 68.106 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium5321g00028 AUX_IAA 2.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5321g00028 - - gmx:100784373 1570.06