Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5321g00027 ATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGATTAGAAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCGAGCTTGCCACCCCAGTTAATTTGTCAACTGCACAATGTTACAATGCATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACATTGCAGCCGTTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAATTGGGCATTCCCAGTAAGCAGCCATCAAATTATTTTTGCAAGACATTAACAGCCAGTGATACCAGTACACATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCAGCACAGGAACTGATTGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGGCATATTTTTCGGGGACAGCCGAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTCGTGGCTGGAGATTCTGTGCTTTTCATTTGGAATGAGAAGAATCAGCTTCTTTTGGGAATCCGCCGTGCCAATAGACCACAAACTGTAATGCCATCATCGGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCTGCCCATGCTGCAGCGACTAATAGCTGTTTTACCGTGTTTTATAATCCGAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAGTATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCGAATTCTCACTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCTATGTACCCGTCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGAGATGAAGCAAGTAATGGGCTGATGTGGCTGAGGGGTGGAGCTGTAGACCAAGGTCTCAATTCGCTAAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGAATGGATCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGGTTGCAGAATCTAGGCAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAACAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAATTCTCCTTTGCAACTTCAGTCGCAGCAATCAGTTCAACAATCTGTATCTTCTAACATGCTGCAGCCACAAGCCCATGTACTGACAGAGAACCTCTCTCAGCACCTACTTCAGAAACCGCACAACAATCAAGAAGTCCAAGCGCAACAGCAGCAGCATTCTTATCAAGAATCGCTCTTAATTCCAAGTGATCAGCTCCATCAGAGACAACACTCTGGCGTTCCTTCACCATCGTATTCAAAACCAGATTTCTTGGATTCGAGCATGAAGTTCCCTGTTTCAGTTTCTCCTGGACAAAACATGCTTAGTTCACTTTGTCCTGAAGGAAGTGGAAATCTCTTGAATTTATCAAGGAGTGGTCCGTCCTTGCTGAGTGAACAGCAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCTTATGGAAGCACTGTGTCGCAGACACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATCTTAACTCAGATGCCCAAAATTCAACTCTATTTGGTGTCAATATTGATTCATCTGGCCTTCTTCTTCCCACCACAGTCCCTGGTTACAGCACCTCATCTGCGGATACTAATTCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCTGTTTGGTTGCATGCAAGATTCGTCAGAGTTGTTGCAAAGCGCAGGGCATGTTGATCCACAAAACCAGACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCTGTTGGGCGCTCACTTGACATATCCCGGTTCAGCAGCTATCATGAACTGCGTGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGCAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTGAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCAGTGGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTCAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGAATACTGA 2517 0.4609 MKLSTSGLGQQGLEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEASNGLMWLRGGAVDQGLNSLNFQGAGMLPWMQQRMDPTLLGSDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSNSPLQLQSQQSVQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHSYQESLLIPSDQLHQRQHSGVPSPSYSKPDFLDSSMKFPVSVSPGQNMLSSLCPEGSGNLLNLSRSGPSLLSEQQWTQKYAPVQVNAYGSTVSQTQYSGKDSAMVLPHLNSDAQNSTLFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSLFGCMQDSSELLQSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5321g00027 838 SMART B3_2 127 229 IPR003340 GO:0003677
Vium5321g00027 838 SUPERFAMILY CAD & PB1 domains 707 786 - -
Vium5321g00027 838 Pfam AUX/IAA family 708 796 IPR033389 -
Vium5321g00027 838 Gene3D - 125 228 IPR015300 -
Vium5321g00027 838 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium5321g00027 838 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Vium5321g00027 838 MobiDBLite consensus disorder prediction 469 495 - -
Vium5321g00027 838 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vium5321g00027 838 FunFam Auxin response factor 291 363 - -
Vium5321g00027 838 Gene3D - 708 801 - -
Vium5321g00027 838 MobiDBLite consensus disorder prediction 816 838 - -
Vium5321g00027 838 FunFam Auxin response factor 125 229 - -
Vium5321g00027 838 ProSiteProfiles PB1 domain profile. 712 796 IPR000270 GO:0005515
Vium5321g00027 838 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 801 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium5321g00027 838 FunFam Auxin response factor 707 801 - -
Vium5321g00027 838 Gene3D - 291 363 - -
Vium5321g00027 838 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vium5321g00027 838 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vium5321g00027 838 MobiDBLite consensus disorder prediction 816 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5321g00027 Vium-Chr5321 182881 189902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5321g00027 97 804 B3 DNA Binding Superfamily AT5G37020 68.106 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium5321g00027 AUX_IAA 2.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5321g00027 - - gmx:100784373 1566.59