Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5321g00001 ATGGAGACCGTTCCCTCTGTTCTCAAGAAATACTTTGGGTTTTCTCATTTTCGGCCTTATCAGAGAGAAGTTATTGAGAAAATTATCGAGAGAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCCTTGGTTGTTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCGTTAATGCAAGACCAGGTGATGGCTTTAAAACAACGAGGTATTAGAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACGTGGTCAATTTGACATTTTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTACCAGTTTCTGGACCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCGGAATGGGGACATGATTTTAGGGTGGAATACAAGCATTTAGACAAGTTACGTGAGGTCTTGCTTGATGTTCCTTTTGTTGGTCTAACTGCGACTGCTACTGAAAAGGTTCGATTTGACATCATCAGTTCCCTGAAGATGGATAACCCTTATGTTACGATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGTGGACAATCTTTTATTGATGAGCTTGTGCGGGAAATTTCAAAAGAAGTTGCTACTGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGGTATTCAAGTCATTTACAGAAGCAGGCATTGAGGCAGGAATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGACTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATTGCTTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAAAGTCTAGAATCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTATTACACAAGAAGTGACTTTGCAAAGGGCGACTTTTACTGTGGAGATATAAAATCAGAAAAACAAAGAAAAGCTGTTATGGAGTCATTGCTCGCAGCTGAACGCTATTGTGTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAAATTTCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAGTCTCAAAGAAGGAGCGAGACATGTCAAGGGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAATGGCAGATGGGGCCTTAATATGCCTATTGATGTCCTGCGCGGGTCTCGAGCCAAAAAAGTTCTCGAGGTTCAGTTTGATAAGCTTCCACTTCATGGGCTGGGGAAAAATTATCCAGCAAATTGGTGGAAATCACTTGGGCAGCAATTGATTTCTCAAGGTTATCTGAAGGAGACTGTTAGTGACGTATACAGAACTATAAGTGTCAGTTCAAGAGGAGAGCAGTTTTTGGCCTCTTCAAGACCAGATTATCAACCTCCTTTAGTTTTGACATTGACTGCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGACGAATTTAAAACTTTATCCACTTCAGAATTAGATGGTTTTTCAGAGGCTGAGAGAAAGCTCCATCAAATGCTTTTGGAAGAAAGATTAGAGCTTGCAAGAAGTGTCGGAACAGCTCCATATGCTATCTGTGGAGATCAAACGATCAGGAAAATTGCTTTGACAAGACCATCTACAAAAGCAAGACTAGCAAACATTAATGGTGTAAATCAGCACCTAGTGATGAAATATGGAGATCATTTTCTTCAAGTTATTCAGAAACTGTCACAAGGACTAAACCTATCATTGGACGGGGAAGAAAGGGTCCCAACGGCTAGTTTGCAAACTAATACAGTAACGAAAGTGTCTCCACTAACCAACAAATCCAAGAAGTTGACATCAGCGAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTATTCACGATATTGCTAACTTAGAAGTTAGATCGGCTCCTATAAAAGAACAAACTGTTGCTGAATATCTACTGGAAGCTGCCCAAGAAGGATTACCTTTTGATTGGGTTAGATTCAGCAAGATGATAGGACTCACTCAAGAGATCATGTCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGACAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAGATATAAGTTATCAGCACATCAAGACTTATTTGTCAATGCGAAACTGTGGTATATCCTTGGAAACTAATCAGTCTGGAAGTAACCAAACCGGGAAAGATGACGAACTTGCACACAATGCTTCAAATTTGTCAGACTGTACTTTAGAAACATGTCCTGACAGGCAATGTGAAGATGACATTTCTGTAAAAGGTTTGGCTGAACAAAGTGACTTAGAAATGGATGAGGTACCTTCTTTACCTGTCAACGGTTCTGAGGAACAGAATATTTCAAATGCCAGGGAAGGGGAATTCACAAGAAAACGACAAAGGGTCAGTGAAACGGAGGAAGTAAACTCAACTAGATTGAAGGCTACAGTGAGTTCTGTTGTAGAGTGGATGAAGAACCTTGATGAAGGGGCTACGTTGAGCAATATTTTGGAACACTTCAATGGATCCAGTGAAGATTCTGTGGTTGAACTGCTCAATTGCTTAGAGTGTGACTTTTTAATATATAGGAAAGGGAACGTGTACAGGGTTTTGTAA 2754 0.4041 METVPSVLKKYFGFSHFRPYQREVIEKIIERRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQKDFTVHSKAERGQFDILFMTPEKACTVPTSFWTNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRFDIISSLKMDNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVATGGSTIIYCTTIKDVEQVFKSFTEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDIKSEKQRKAVMESLLAAERYCVLTTCRRKFLLEYFGEKISADRCGNCDNCKVSKKERDMSREAFLLMACIHSCNGRWGLNMPIDVLRGSRAKKVLEVQFDKLPLHGLGKNYPANWWKSLGQQLISQGYLKETVSDVYRTISVSSRGEQFLASSRPDYQPPLVLTLTAEMLGEEDNGNTQDEFKTLSTSELDGFSEAERKLHQMLLEERLELARSVGTAPYAICGDQTIRKIALTRPSTKARLANINGVNQHLVMKYGDHFLQVIQKLSQGLNLSLDGEERVPTASLQTNTVTKVSPLTNKSKKLTSAKFEAWKMWHEDGLSIHDIANLEVRSAPIKEQTVAEYLLEAAQEGLPFDWVRFSKMIGLTQEIMSEIQGAISKVGSTDKLKPIKNELPEDISYQHIKTYLSMRNCGISLETNQSGSNQTGKDDELAHNASNLSDCTLETCPDRQCEDDISVKGLAEQSDLEMDEVPSLPVNGSEEQNISNAREGEFTRKRQRVSETEEVNSTRLKATVSSVVEWMKNLDEGATLSNILEHFNGSSEDSVVELLNCLECDFLIYRKGNVYRVL 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5321g00001 917 SMART hrdc7 543 623 IPR002121 GO:0003676
Vium5321g00001 917 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vium5321g00001 917 CDD DEXHc_RecQ 6 199 - -
Vium5321g00001 917 NCBIfam RecQ family ATP-dependent DNA helicase 6 458 IPR004589 GO:0004386|GO:0006310
Vium5321g00001 917 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 688 - -
Vium5321g00001 917 SMART helicmild6 245 326 IPR001650 -
Vium5321g00001 917 SUPERFAMILY HRDC-like 542 618 IPR010997 GO:0000166|GO:0044237
Vium5321g00001 917 FunFam ATP-dependent DNA helicase 200 401 - -
Vium5321g00001 917 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Vium5321g00001 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Vium5321g00001 917 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Vium5321g00001 917 Pfam Helicase conserved C-terminal domain 219 325 IPR001650 -
Vium5321g00001 917 FunFam ATP-dependent DNA helicase 402 526 - -
Vium5321g00001 917 FunFam ATP-dependent DNA helicase 1 198 - -
Vium5321g00001 917 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Vium5321g00001 917 Gene3D - 402 525 IPR036388 -
Vium5321g00001 917 Pfam Helix-turn-helix domain 659 755 IPR029491 -
Vium5321g00001 917 Pfam HRDC domain 548 613 IPR002121 GO:0003676
Vium5321g00001 917 Gene3D - 1 198 IPR027417 -
Vium5321g00001 917 ProSiteProfiles HRDC domain profile. 543 623 IPR002121 GO:0003676
Vium5321g00001 917 Pfam RQC domain 404 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vium5321g00001 917 Gene3D - 200 401 IPR027417 -
Vium5321g00001 917 Pfam RecQ zinc-binding 344 400 IPR032284 -
Vium5321g00001 917 SMART ultradead3 13 208 IPR014001 -
Vium5321g00001 917 Gene3D HRDC domain 542 622 IPR044876 -
Vium5321g00001 917 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 370 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5321g00001 Vium-Chr5321 11587 21639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5321g00001 235 342 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 2.93e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5321g00001 K03654 - gmx:100797777 1621.29