Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5315g00006 ATGGGAAGAGGAAGGGTTGTTCTTGAGAGAATAGAGAACAAGATCAACCGTCAAGTAACGTTCTCAAAGCGCAGAAGTGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTGCTCTGTGATGCAGAAGTTGCCCTTATCGTCTTTTCTAGCCGTGGCAAGCTTTTTCAGTATAGCAGCACTGATATTAATAAAATCGTTGAGAGGTATCGCCAATGTCGTTACAGCAAGTTACAGACGGGTGATTCATCGGAACTCGAATCACAGAGTTCATATCATGAATTCTTGAAATTAAGAGCGAAATACGAATCTCTTGAGCGGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCTCTTAGCTTTAAAGAATTGCAGAGCCTTGAGAAACAACTAGATATTACACTTGCTCTAACTCGACAGCAGCAAACAAAGAAGCTGATGGCACGAGCTGATGAATTACGCGAAAAGGTGCGCAAAATGGAAGATCTTAACAAACAATTGGAATCTAAGGAAAAAGATGAATTCTCAAACCTCATTCTTGAGAGTAACAATTTTTTTCAACTGCATGCTACACAAGCCGATCAATTTGAATCTGGAACAACACTAAACACATGGTTTCAACAGCAAGAAGTTGGTTCGAAAGAAAGAGCAATTGATAGCACTCACACCAAAAGCAATGGATGGTTGTAG 690 0.4072 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSSRGKLFQYSSTDINKIVERYRQCRYSKLQTGDSSELESQSSYHEFLKLRAKYESLERTQRHFQGEELEPLSFKELQSLEKQLDITLALTRQQQTKKLMARADELREKVRKMEDLNKQLESKEKDEFSNLILESNNFFQLHATQADQFESGTTLNTWFQQQEVGSKERAIDSTHTKSNGWL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5315g00006 229 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium5315g00006 229 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vium5315g00006 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium5315g00006 229 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium5315g00006 229 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vium5315g00006 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Vium5315g00006 229 Coils Coil 143 173 - -
Vium5315g00006 229 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Vium5315g00006 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium5315g00006 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium5315g00006 229 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Vium5315g00006 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium5315g00006 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium5315g00006 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium5315g00006 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5315g00006 Vium-Chr5315 55318 62270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5315g00006 1 170 MADS-box Gene Family AT2G45650 56.471 2.91e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium5315g00006 K-box 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5315g00006 K09264 - gmx:100793681 381.333