Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5315g00002 ATGGGCAAGGAAGGGTATTTTGCTGGAAGATCATCAAAGAAAGGTGTAGTAGTTGGAGGAGGAGGAGGAGGAGGAGGTGATGCTGAAACACAAGCCCCTTCTGGTTGCATGTGTGCTGTTTTTCAGTTCTTTGATTTCCATCCCTTTCACTTTCCCAACATAACCCAACAACAAACCTCTTTCAAACCACCCTCATGCACTTTACAAGACCATGCCACAGTCTCCAAAGGTGCTGAAGCACCTAGGAACAGCTTGGAATCAGAGGATGGTGATGCTCCTGTTTCATCTCTCTCTTCAAAAGAAGAGGATTTTAAAATTCCTAAGAATATTATGCAAATTAAGACAAGTGGAGGCAGAAGAACAGGTGGTGGAAATTTGAATGACTTGTCTGCAGAAATCACCAGCTCACCAGGGACAAAGACACCAACTTTGGTGGCCAGGTTAATGGGTTTGGATCTTCTTCCAGGGACACAGTCACCCTCTTTCTCTTCTTCTTCTTCTTCTTCTTCGTGTCTTTCCGCTCCCAACACACACGGCAATGCGCCACATCTGCACCACCACCTCAGGCACAAGCAACATGTCCTAACGAAGCATAGAAACAGCATAGACAGCAGTGACATTGCAGCCACGAGATCTTTGCCTGAGACACCAAGAATCTCCTTAGCAAGAAGATCAGATGTTGATTATTACCACCACAGATTCTCACTCCAAATCAACAAGGAAAACATGAATCTTGGTGAGGATTTGGAGCTCCCTAGGCTCTCGTTTTCCAAAAAAAAGTGTGATGAGAACAATGGCAGGAGTCCAGGCCACTATGCTAGGCAAATAGTCAAACAGGTTAAGGATAGTGTGGGCAGAAAAGTTGGCCAAGACATCACAAACACTCTCAAAACAAGAGAGGAAATTGTAGGCCAACTCAAAAGCAAAAAATCTTCCAAAACATCACCACTGAAAGCAATTAATGAAACTGAAAGTAGTCCTCTGAAACCACACTCAAACACATCTTCCTATTCCCCAAGGCTTAGATTCATTGACAAGAACAAACAAAACACCACAGCCACACCATCACCACTCACCCCAAAAGACCAAAACATGCTAAAACTACCATCACCTCCTCCTCCAGTTAACACTCAGCTTTCAAGAGTTTTAGCAAAACCAAAGCCTCAAACATTATCTTTGCCGGAGCAGCAAGATTTTCATCAGAATAGCAAATCTGAACCAAAATGCAAAATGACTACCAATGAAAAGTTCAACTCAAGGTTCAAAAGGCCTCCTCAGACATCGGACATAATCAGAAACAAACAAGAGGAATCGTTCGTCTTTCGTCCCACATCGCCTACTAGAGCCAGTGACACCAAAACTTCTAAAAGCAAGAAAATTCATCCATTGTCAAGTAATCTTCTCAACAACATCAACACTGTACCAAATCTTCTTCCTGTCAAGACTGACCCTTCTCCTCCAGCAACCAAAATTCCTCCAAAACAGTCACAGGTGTGTGATAGTCAAGAGTCCAAAAGCAGCTCACAGTTATCTAGTTGTTCGCGCCAGAGGTACAAACAAGAAGGAACAACCACACTCGCCACCCGAGAAACGTCACAGAACAAACATAACAGTGCCTCCGCCACCATTGGAGCACCGCAGCCTCACACCCCACAAGAGCTTCACTACATCACAGCAATCCTTGCCCGTACAACTGCCCTAAACGTGGAGGACAACCCCACAAACCCACCATTAACGTCCCACCAACACCACCACTGGTTCTCCCCAACCCATTCACTTGACCCATCAATCTTCCTCCACCTGGAACACCTCGCCACCAACAAAGATCTGAGCTTTTCCCCGAAAGAACAACTGGGTCACCATTGGAATCGGAAGTTACTGTTCGATCTGGTGGACGAGGTTCTGAAGGAGATTCTGCAAGAGAGAGGGAAGAATGGGCTTTGGTTTTCGAAGGGTGTCGGCGGCTGTTGGCACAGTGGGAGCTTTGTGGAGAGGGTGTGGAAGAGGGTGGGTGAGTTCCCACGTGCGAAGTGTGAGGTGTTGGAGGACATTGATGGGTTGATTGAGGGAGAGGACATGCAGAAAGAGAAGGATGGTGAAGGGTTGGAGGAAGAAGGAGAAGGGTTGGTGGCAGAGATTGAAGGGAACATATGGGACACGTTAGTGCATGAAACGGTTATGCTTATAGATTGCTTGGGAAATGTGAGAAAAGAGAAGTCATTAGATGATGTGAAAATATCACATGTTTGTACTATCTCTCAATTTTAA 2268 0.4541 MGKEGYFAGRSSKKGVVVGGGGGGGGDAETQAPSGCMCAVFQFFDFHPFHFPNITQQQTSFKPPSCTLQDHATVSKGAEAPRNSLESEDGDAPVSSLSSKEEDFKIPKNIMQIKTSGGRRTGGGNLNDLSAEITSSPGTKTPTLVARLMGLDLLPGTQSPSFSSSSSSSSCLSAPNTHGNAPHLHHHLRHKQHVLTKHRNSIDSSDIAATRSLPETPRISLARRSDVDYYHHRFSLQINKENMNLGEDLELPRLSFSKKKCDENNGRSPGHYARQIVKQVKDSVGRKVGQDITNTLKTREEIVGQLKSKKSSKTSPLKAINETESSPLKPHSNTSSYSPRLRFIDKNKQNTTATPSPLTPKDQNMLKLPSPPPPVNTQLSRVLAKPKPQTLSLPEQQDFHQNSKSEPKCKMTTNEKFNSRFKRPPQTSDIIRNKQEESFVFRPTSPTRASDTKTSKSKKIHPLSSNLLNNINTVPNLLPVKTDPSPPATKIPPKQSQVCDSQESKSSSQLSSCSRQRYKQEGTTTLATRETSQNKHNSASATIGAPQPHTPQELHYITAILARTTALNVEDNPTNPPLTSHQHHHWFSPTHSLDPSIFLHLEHLATNKDLSFSPKEQLGHHWNRKLLFDLVDEVLKEILQERGKNGLWFSKGVGGCWHSGSFVERVWKRVGEFPRAKCEVLEDIDGLIEGEDMQKEKDGEGLEEEGEGLVAEIEGNIWDTLVHETVMLIDCLGNVRKEKSLDDVKISHVCTISQF 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5315g00002 755 MobiDBLite consensus disorder prediction 157 195 - -
Vium5315g00002 755 MobiDBLite consensus disorder prediction 382 400 - -
Vium5315g00002 755 MobiDBLite consensus disorder prediction 418 451 - -
Vium5315g00002 755 MobiDBLite consensus disorder prediction 76 101 - -
Vium5315g00002 755 Pfam DUF761-associated sequence motif 130 159 IPR032795 -
Vium5315g00002 755 Pfam Domain of unknown function (DUF4378) 553 724 IPR025486 -
Vium5315g00002 755 MobiDBLite consensus disorder prediction 401 417 - -
Vium5315g00002 755 MobiDBLite consensus disorder prediction 459 479 - -
Vium5315g00002 755 MobiDBLite consensus disorder prediction 308 363 - -
Vium5315g00002 755 MobiDBLite consensus disorder prediction 303 549 - -
Vium5315g00002 755 MobiDBLite consensus disorder prediction 157 177 - -
Vium5315g00002 755 MobiDBLite consensus disorder prediction 492 547 - -
Vium5315g00002 755 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5315g00002 Vium-Chr5315 1558 5976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5315g00002 111 725 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 34.531 7.58e-60 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5315g00002 - - gmx:100795947 983.015