Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5315g00001 ATGGGCAAGGAAGGGTATTTTGCTGGAAGATCATCAAAGAAAGGTGTAGTAGTTGGAGGAGGAGGAGGAGGAGGAGGTGATGCTGAAACACAAGCCCCTTCTGGTTGCATGTGTGCTGTTTTTCAGTTCTTTGATTTCCATCCCTTTCACTTTCCCAACATAACCCAACAACAAACCTCTTTCAAACCACCCTCATGCACTTTACAAGACCATGCCACAGTCTCCAAAGGTGCTGAAGCACCTAGGAACAGCTTGGAATCAGAGGATGGTGATGCTCCTGTTTCATCTCTCTCTTCAAAAGAAGAGGATTTTAAAATTCCTAATATTATGCAAATTAAGACAAGTGGAGGCAGAAGAACAGGTGGTGGAAATTTGAATGACTTGTCTGCAGAAATCACCAGCTCACCAGGGACAAAGACACCAACTTTGGTGGCCAGGTTAATGGGTTTGGATCTTCTTCCAGGGACACAGTCACCCTCTTTCTCTTCTTCTTCTTCTTCTTCTTCGTGTCTTTCCGCTCCCAACACACACGGCAATGCGCCACATCTGCACCACCACCTCAGGCACAAGCAACATGTCCTAACGAAGCATAGAAACAGCATAGACAGCAGTGACATTGCAGCCACGAGATCTTTGCCTGAGACACCAAGAATCTCCTTAGCAAGAAGATCAGATGTTGATTATTACCACCACAGATTCTCACTCCAAATCAACAAGGAAAACATGAATCTTGGTGAGGATTTGGAGCTCCCTAGGCTCTCGTTTTCCAAAAAAAAGTGTGATGAGAACAATGGCAGGAGTCCAGGCCACTATGCTAGGCAAATAGTCAAACAGGTTAAGGATAGTGTGGGCAGAAAAGTTGGCCAAGACATCACAAACACTCTCAAAACAAGAGAGGAAATTGTAGGCCAACTCAAAAGCAAAAAATCTTCCAAAACATCACCACTGAAAGCAATTAATGAAACTGAAAGTAGTCCTCTGAAACCACACTCAAACACATCTTCCTATTCCCCAAGGCTTAGATTCATTGACAAGAACAAACAAAACACCACAGCCACACCATCACCACTCACCCCAAAAGACCAAAACATGCTAAAACTACCATCACCTCCTCCTCCAGTTAACACTCAGCTTTCAAGAGTTTTAGCAAAACCAAAGCCTCAAACATTATCTTTGCCGGAGCAGCAAGATTTTCATCAGAATAGCAAATCTGAACCAAAATGCAAAATGACTACCAATGAAAAGTTCAACTCAAGGTTCAAAAGGCCTCCTCAGACATCGGACATAATCAGAAACAAACAAGAGGAATCGTTCGTCTTTCGTCCCACATCGCCTACTAGAGCCAGTGACACCAAAACTTCTAAAAGCAAGAAAATTCATCCATTGTCAAGTAATCTTCTCAACAACATCAACACTGTACCAAATCTTCTTCCTGTCAAGACTGACCCTTCTCCTCCAGCAACCAAAATTCCTCCAAAACAGTCACAGGTGTGTGATAGTCAAGAGTCCAAAAGCAGCTCACAGTTATCTAGTTGTTCGCGCCAGAGGTACAAACAAGAAGGAACAACCACACTCGCCACCCGAGAAACGTCACAGAACAAACATAACAGTGCCTCCGCCACCATTGGAGCACCGCAGCCTCACACCCCACAAGAGCTTCACTACATCACAGCAATCCTTGCCCGTACAACTGCCCTAAACGTGGAGGACAACCCCACAAACCCACCATTAACGTCCCACCAACACCACCACTGGTTCTCCCCAACCCATTCACTTGACCCATCAATCTTCCTCCACCTGGAACACCTCGCCACCAACAAAGATCTGAGCTTTTCCCCGAAAGAACAACTGGGTCACCATTGGAATCGGAAGTTACTGTTCGATCTGGTGGACGAGGTTCTGAAGGAGATTCTGCAAGAGAGAGGGAAGAATGGGCTTTGGTTTTCGAAGGGTGTCGGCGGCTGTTGGCACAGTGGGAGCTTTGTGGAGAGGGTGTGGAAGAGGGTGGGTGAGTTCCCACGTGCGAAGTGTGAGGTGTTGGAGGACATTGATGGGTTGATTGAGGGAGAGGACATGCAGAAAGAGAAGGATGGTGAAGGGTTGGAGGAAGAAGGAGAAGGGTTGGTGGCAGAGATTGAAGGGAACATATGGGACACGTTAGTGCATGAAACGGTTATGCTTATAGATTGCTTGGGAAATGTGAGAAAAGAGAAGTCATTAGATGATGTGAAAATATCACATGTTTGTACTATCTCTCAATTTTAA 2265 0.4543 MGKEGYFAGRSSKKGVVVGGGGGGGGDAETQAPSGCMCAVFQFFDFHPFHFPNITQQQTSFKPPSCTLQDHATVSKGAEAPRNSLESEDGDAPVSSLSSKEEDFKIPNIMQIKTSGGRRTGGGNLNDLSAEITSSPGTKTPTLVARLMGLDLLPGTQSPSFSSSSSSSSCLSAPNTHGNAPHLHHHLRHKQHVLTKHRNSIDSSDIAATRSLPETPRISLARRSDVDYYHHRFSLQINKENMNLGEDLELPRLSFSKKKCDENNGRSPGHYARQIVKQVKDSVGRKVGQDITNTLKTREEIVGQLKSKKSSKTSPLKAINETESSPLKPHSNTSSYSPRLRFIDKNKQNTTATPSPLTPKDQNMLKLPSPPPPVNTQLSRVLAKPKPQTLSLPEQQDFHQNSKSEPKCKMTTNEKFNSRFKRPPQTSDIIRNKQEESFVFRPTSPTRASDTKTSKSKKIHPLSSNLLNNINTVPNLLPVKTDPSPPATKIPPKQSQVCDSQESKSSSQLSSCSRQRYKQEGTTTLATRETSQNKHNSASATIGAPQPHTPQELHYITAILARTTALNVEDNPTNPPLTSHQHHHWFSPTHSLDPSIFLHLEHLATNKDLSFSPKEQLGHHWNRKLLFDLVDEVLKEILQERGKNGLWFSKGVGGCWHSGSFVERVWKRVGEFPRAKCEVLEDIDGLIEGEDMQKEKDGEGLEEEGEGLVAEIEGNIWDTLVHETVMLIDCLGNVRKEKSLDDVKISHVCTISQF 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5315g00001 754 MobiDBLite consensus disorder prediction 156 176 - -
Vium5315g00001 754 MobiDBLite consensus disorder prediction 491 546 - -
Vium5315g00001 754 MobiDBLite consensus disorder prediction 400 416 - -
Vium5315g00001 754 Pfam Domain of unknown function (DUF4378) 552 723 IPR025486 -
Vium5315g00001 754 Pfam DUF761-associated sequence motif 129 158 IPR032795 -
Vium5315g00001 754 MobiDBLite consensus disorder prediction 307 362 - -
Vium5315g00001 754 MobiDBLite consensus disorder prediction 458 478 - -
Vium5315g00001 754 MobiDBLite consensus disorder prediction 76 100 - -
Vium5315g00001 754 MobiDBLite consensus disorder prediction 302 548 - -
Vium5315g00001 754 MobiDBLite consensus disorder prediction 156 192 - -
Vium5315g00001 754 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 728 - -
Vium5315g00001 754 MobiDBLite consensus disorder prediction 381 399 - -
Vium5315g00001 754 MobiDBLite consensus disorder prediction 417 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5315g00001 Vium-Chr5315 1557 5976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5315g00001 110 724 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 34.531 6.06e-60 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5315g00001 - - gmx:100795947 976.467