Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5310g00012 ATGAGTTGTTTCAGCTGTTGCGAGGAGGATGAACTCCAGAAGTCTGCTGAAAGTGGAGGACCCTATGTAGTAAAAAATCCAGCAGGGAATGATGGAAATTATCATGCTTCTGAAACTGCAAAGCAGGGCATTCAAGCTGTTAAAATTCAGCCCATTGAAGTTCCCGAATTACAAGTGGATGAACTCAAAGAAATTACTGACGGCTTTGGAGAAAGTTCTTTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTTAAAAGTGGGCAGGCAGCCGCAATCAAGAACTTGGATGCCAGTAAACAGCCTGATGAGGAATTTTTAGCCCAGGTTTCAATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCAGTTGCTTGGATATTGCATTGATGGAAGCTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGATCTCTTCATGATATTTTGCATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCAGTTTTGTCATGGGCACAAAGAGTAAAGATTGCAGTAGGGGCTGCAAGAGGACTTGAATACTTGCACGAGAAGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTGCTAATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTATCAAATCAAGCTCCCGACATGGCTGCACGTCTTCATTCTACTCGTGTCCTTGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGACAATTGAATGCTAAGAGTGATGTATACAGTTTTGGGGTTGTTCTTTTGGAACTTCTGACTGGAAGGAAACCTGTAGATCATACACTACCACGCGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCCGCACTTTGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTGCTGGCTACTCGACCTGGACCTGCCGGTGAAACACCAAATTAA 1086 0.4337 MSCFSCCEEDELQKSAESGGPYVVKNPAGNDGNYHASETAKQGIQAVKIQPIEVPELQVDELKEITDGFGESSLIGEGSYGRVYYGVLKSGQAAAIKNLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCIDGSSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLATRPGPAGETPN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5310g00012 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5310g00012 361 SUPERFAMILY Protein kinase-like (PK-like) 49 345 IPR011009 -
Vium5310g00012 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Vium5310g00012 361 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Vium5310g00012 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 351 - -
Vium5310g00012 361 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Vium5310g00012 361 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Vium5310g00012 361 CDD STKc_IRAK 75 348 - -
Vium5310g00012 361 FunFam pto-interacting protein 1 145 356 - -
Vium5310g00012 361 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
Vium5310g00012 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5310g00012 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vium5310g00012 361 PIRSF ILK 11 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5310g00012 Vium-Chr5310 98015 102004 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5310g00012 48 352 Receptor kinase-like Gene Family AT3G58690 49.677 2.59e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vium5310g00012 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5310g00012 K13436 - gmx:100808383 669.848