Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5310g00011 ATGGCGAATGGAAAGGTGGTTATCTCTAGTGTTTCCCTGATTCTCGTGGTGGGTGTTGCCATCGGTGTTGTGGTCGTGGTTAACAAAAGTGACTCATCATCTGATCCTAAAGTAGCTGCTCAACAAAAGAACGTGAAGGTAATGTGCGAAGGCACCGAAGACCCTAAGCTTTGTCACGAAACTATGAGCACTGTGAAAGGTAACACCTCAGACCCAAAGGTTTACATAGCAGCAGGAGTGGAAGCAACGATGCAGAGAGTGATCCAAGCTTTGAACATGAGTGATAGGCTGAAAGTGGAGCATGGAGACAAGGATCCCGGCATAAAAATGGCCCTCGATGATTGTAAAGATTTGATCCAATTCGCGTTGGATAGCATCGAGTCCTCGGTTAACTTGGTCCGCGACCAGAACATTCAAGCCATGTATGACCAAACCCCAGACTTCAGGAACTGGTTGAGTTCTATAATCTCGTACCAGGATACGTGCATGGACGGGTTAAACAACGGCACAAACGGTGAGAAAGAAATTAAGGAAAAATTAAACACAGATAGTTTGGACGAAATGGGAAAGATGACGGGCATAGTCCTTGACATCGTGACAAACTTGTCCAATATCCTTGAGAAATTTGACTTGAAGTTGAATTTGAGACCTGCTTCTCGGCGTCTTCTAGAGTTGGACGATGAAGGGTTACCTACGTGGTTCTCTGGTGCAGATCGGAAGCTCCTTGCTGCCGTGGATAAAGGCACAGCTGGGGAACCCAACGCAGTGGTTGCGAAGGATGGCAGTGGAAAATTCAAAACCGTTAAGGAAGCTATTGATTCCTACCCTAATGGCAACACGGGCAGATTTGTTATTTACGTTAAGGCTGGGATCTATGATGAGTACATCCTCATTCCTAAGAAGTCATCCAATATTCTCATTTATGGAGATGGCCCTGCAAAGACCATTATTACCGGTCACAAGAACTTTGTAGATGGCGTCAAGACAATGCAAACTGCTACCTTCGCCAACACTGCACCAGGATTCATCGCCAAGTCAATGACATTCGAGAATACCGCGGGTGCCGCTAAGCACCAGGCAGTGGCATTCAGAAACCAGGGAGACATGTCAGCAATGTTCGACTGCGCATTTCACGGTTACCAAGACACACTGTACGTTCACGCCAACCGGCAATTCTACCGGAACTGTGAAATCTCTGGAACAATCGACTTCATCTTCGGAGCATCTGCGACTGTGATCCAGAACTCGAGAATCATCGCGAGGTTGCCACTATCTAACCAGTTCAACACAGTGACCGCGGACGGAACGAAGATGAAGAACATGGCGACAGGGATCGTGATCCAGAACTGCGAGATAGTGCCAGAGAAGGCTCTGTACCCTACGAGGTTGACCGTTAAATCGTACTTGGGAAGGCCGTGGAAGCAATATGCAAGAACTGTTGTGATGGAAAGCAACATAGGTGACGTTATTAATGCGGAGGGGTGGTGTCCTTGGGATGGGACCATGTTTCTTGACACCTTGTACTATGCTGAGTACGCTAACAGCGGACCTGGTTCCAACGTTCAAGGAAGGATAAAGTGGAAGGGTTACCAAGGAATTATTACTAAGACCGATGCTGAAAAATTCACTGTTGGCCAATTCCTGAAAGGTGGAACTACTGGGAATGCTGACGATTGGTTGAAGGCTACCGGGGTTCCTTTCGCCGCTGGATTCCTCAAATCTTGA 1725 0.473 MANGKVVISSVSLILVVGVAIGVVVVVNKSDSSSDPKVAAQQKNVKVMCEGTEDPKLCHETMSTVKGNTSDPKVYIAAGVEATMQRVIQALNMSDRLKVEHGDKDPGIKMALDDCKDLIQFALDSIESSVNLVRDQNIQAMYDQTPDFRNWLSSIISYQDTCMDGLNNGTNGEKEIKEKLNTDSLDEMGKMTGIVLDIVTNLSNILEKFDLKLNLRPASRRLLELDDEGLPTWFSGADRKLLAAVDKGTAGEPNAVVAKDGSGKFKTVKEAIDSYPNGNTGRFVIYVKAGIYDEYILIPKKSSNILIYGDGPAKTIITGHKNFVDGVKTMQTATFANTAPGFIAKSMTFENTAGAAKHQAVAFRNQGDMSAMFDCAFHGYQDTLYVHANRQFYRNCEISGTIDFIFGASATVIQNSRIIARLPLSNQFNTVTADGTKMKNMATGIVIQNCEIVPEKALYPTRLTVKSYLGRPWKQYARTVVMESNIGDVINAEGWCPWDGTMFLDTLYYAEYANSGPGSNVQGRIKWKGYQGIITKTDAEKFTVGQFLKGGTTGNADDWLKATGVPFAAGFLKS 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5310g00011 574 ProSitePatterns Pectinesterase signature 1. 279 298 IPR018040 -
Vium5310g00011 574 PANTHER PECTINESTERASE 19 561 - -
Vium5310g00011 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 204 IPR035513 -
Vium5310g00011 574 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Vium5310g00011 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 203 IPR035513 -
Vium5310g00011 574 CDD PMEI-like_3 48 204 - -
Vium5310g00011 574 Pfam Pectinesterase 254 550 IPR000070 GO:0030599|GO:0042545
Vium5310g00011 574 Pfam Plant invertase/pectin methylesterase inhibitor 45 198 IPR006501 GO:0004857
Vium5310g00011 574 NCBIfam pectinesterase inhibitor domain 23 202 IPR006501 GO:0004857
Vium5310g00011 574 FunFam Pectinesterase 41 203 - -
Vium5310g00011 574 Gene3D - 249 571 IPR012334 -
Vium5310g00011 574 SMART PMEI_2 40 198 IPR006501 GO:0004857
Vium5310g00011 574 FunFam Pectinesterase 249 571 - -
Vium5310g00011 574 SUPERFAMILY Pectin lyase-like 251 569 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5310g00011 Vium-Chr5310 93414 95357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5310g00011 6 572 Carbohydrate Esterase AT3G05610 40.598 1.57e-142 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5310g00011 K01051 - gmx:100789650 894.419