Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5310g00010 ATGGCCGGAAAAGTACTCGCTCCCGCAATTTCGCTCGTCCTTGTGGTGGGTGTGGTCATTGGCGTGGTTGCTATAGTTCAGAGCCCCAAGGCAGAGACGAACAGCACCGGAAACCTGAAAACCACGAACAGAGCTGTGACAGCGTTGTGCCAAGACTCAGACGACCCAAAACTGTGCCACAATGTGCTTTCCTCCGCAAACAGCTCAGACCCTAAAGATTACATTGTCACCGTGGTGAAAACCTCGATGGACAGTGTCATAAAAGCGTTCAACATGAGCGACAAGCTCACAGTTGAGCACGGCAACAGCAGCCAGGGAATGAAGATGGCTCTCGATGATTGCAAGGATTTGTTGGAAGCCGCGATGCACGATCTCGAAGCCTCAGGTGTGTTGGTCAAAGAGAGCAACATCGAGGACGTTACCGACCGCAGTGCCGAACTCAAGAACTGGTTAGGTGCTGTGGTGGCCTACCAGCAATCTTGCCTCGACGGCTTCAACACCGACGGCGAGAAGAAGGTCCAGGAACAGTTGCAGTCCGGTAGCTTGGACAACGTTGGAAAGCTCACTGGATTGGCACTTGATGTCGTGTCGGGGATTTCAAAGGTTCTTCAATCCTTGGACTTGAACTTGTCCTTGAAACCCGCCTCTCGTCGCCTTCTTGATGTTGATCAAGATGGGTACCCCACTTGGCTCTCCGCCGCTGATCGCAAGCTCTTGTCTCAAGATGGAGTTCTGCCCCATGCTACAGTGGCTAAGGATGGCAGCGGCCAATTCAAAACCATTACTGACGCCATCAACTCCTACCCCAAGAATCACCAAGGAAGATTCATCATCTACGTCAAGGCTGGAATCTATGACGAGTACATCCTTGTTGACAAGAAGAAGTTGAACCTTCTCATCTATGGCGATGGCCCCACCAAGACCATCATCACCGGACGCAAAAACTTCGCCGAGGGTACCAAGACAATGAGAACGGCCACCTTCTCCACTGTTGCTGACGATTTCATGGCAAAGTCCATTGCATTCGAGAACACCGCTGGAGCAGCAGGACATCAAGCAGTGGCTCTCCGCGTGCAGGGTGATCGCTCAGTCTTCTTCGATTGCGCAATGCGCGGTTACCAAGACACTTTGTACGCACACGCCCACCGTCACTTCTACCGCAACTGTGAAATCTCTGGAACAATCGACTTCATCTTCGGGTACGCCACCACCTTGATCCAGAACTCCAAGATCCTGGTCAGGAAGCCCGAATCAAACCAACAAAACATAGTTGTGGCAGATGGAACACAACAGAAAAACATGCCCACTGGAATTGTGGTCCAGAACTGTGAGATCACGGCCGACCCTACACTCTTCCCTGATCGGTTGACAGTGAAGACATACCTTGCAAGGCCATGGAAGGCATTCTCCAGGGCAGTTTTCATTGAGAACGTGATCGGTGACTTGATCCAGCCAGAGGGCTACATTCCATGGAACCCAGCTACTGAGCCGAACACCCAAGACTGCTACTTCGCTGAGTTTGGCAACAGTGGACCTGGTTCCGTTGCTAACGCAAGGGCACCCTTCAGCAAAGGTCTCATCAGCAAGGATGAGGCTGCGAAATTCACTGCTGAGCCCTGGCTCCAAGCTAGCACCTGGTTGCCTGCCACTGGCATTCCTTTTGACGCCGGCTTCACCAAAGCTTAA 1686 0.5219 MAGKVLAPAISLVLVVGVVIGVVAIVQSPKAETNSTGNLKTTNRAVTALCQDSDDPKLCHNVLSSANSSDPKDYIVTVVKTSMDSVIKAFNMSDKLTVEHGNSSQGMKMALDDCKDLLEAAMHDLEASGVLVKESNIEDVTDRSAELKNWLGAVVAYQQSCLDGFNTDGEKKVQEQLQSGSLDNVGKLTGLALDVVSGISKVLQSLDLNLSLKPASRRLLDVDQDGYPTWLSAADRKLLSQDGVLPHATVAKDGSGQFKTITDAINSYPKNHQGRFIIYVKAGIYDEYILVDKKKLNLLIYGDGPTKTIITGRKNFAEGTKTMRTATFSTVADDFMAKSIAFENTAGAAGHQAVALRVQGDRSVFFDCAMRGYQDTLYAHAHRHFYRNCEISGTIDFIFGYATTLIQNSKILVRKPESNQQNIVVADGTQQKNMPTGIVVQNCEITADPTLFPDRLTVKTYLARPWKAFSRAVFIENVIGDLIQPEGYIPWNPATEPNTQDCYFAEFGNSGPGSVANARAPFSKGLISKDEAAKFTAEPWLQASTWLPATGIPFDAGFTKA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5310g00010 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 201 IPR035513 -
Vium5310g00010 561 NCBIfam pectinesterase inhibitor domain 17 176 IPR006501 GO:0004857
Vium5310g00010 561 CDD PMEI-like_3 48 201 - -
Vium5310g00010 561 FunFam Pectinesterase 42 200 - -
Vium5310g00010 561 Pfam Pectinesterase 248 543 IPR000070 GO:0030599|GO:0042545
Vium5310g00010 561 Pfam Plant invertase/pectin methylesterase inhibitor 45 194 IPR006501 GO:0004857
Vium5310g00010 561 SUPERFAMILY Pectin lyase-like 247 556 IPR011050 -
Vium5310g00010 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 197 IPR035513 -
Vium5310g00010 561 SMART PMEI_2 41 195 IPR006501 GO:0004857
Vium5310g00010 561 FunFam Pectinesterase 241 558 - -
Vium5310g00010 561 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Vium5310g00010 561 Gene3D - 244 560 IPR012334 -
Vium5310g00010 561 PANTHER PECTINESTERASE 19 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5310g00010 Vium-Chr5310 82400 84559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5310g00010 1 558 Carbohydrate Esterase AT2G47030 38.870 3.82e-135 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5310g00010 K01051 - gmx:100808559 950.273