Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5310g00006 ATGGGTGTGGAGAATGATGAAGAGAGGAAGCATGATGACGCTAGCACGTCAGAGAATCGTGCAGAAAGCAGCACTAATGGGGAAAGAGAAGAAAAGAGTAAACAGAAAGAAAAACCCGAGACAGTTCCATTTTTCAAGCTGTTCGCTTTTGCAGACTCCACTGACATTCTTTTGATGGTTGTTGGGACTATTGGTGCCATTGGGAACGGGATGGGTTTGCCTATTATGACGTTGCTGTTTGGTCAAATGATCGATAGCTTCGGTAGTAACCAGCAAAATGCTAACGTGGTGGAAGCAGTATCCAAGGTTTCTCTAAAATTTGTATACTTGGCAGTAGGATCTGGGATGGCAGCGTTTCTCCAGGTGACAAGTTGGATGGTCACGGGGGAGAGACAGGCAGCACGAATTAGGGGATTGTATTTGAAAACTATTCTAAGACAAGATATTGTTTTCTTTGATAAGGAAACAAGCACCGGAGAGGTGGTAGGGAGGATGTCAGGTGACACAGTTCTTATTCAAGATGCCATGGGTGAGAAGGTTGGGAAATTTCTGCAGCTAATAGCAACTTTCGTTGGGGGATTTACGGTAGCATTTGTCAAAGGGTGGCTTCTTACTTGTGTCATGTTGGCCACTCTTCCACTTCTAGTTTTTTCTGGAGCGTCCATGGCATTAATCATAGGCAGGATGGCTTCTCGAGGTCAGACGGCTTATGCAAAAGCTTCACATGTAGTCGAACAGACAATTGGCTCAATAAGAACCGTTGCATCCTTTACTGGGGAAAAGCAAGCTGTAAATAATTATAGCAAATTTCTTGTGGATGCTTACAAATCAGGAGTGAGTGAAGGTTCCATTGCTGCAGTGGGCCTAGGCACGGTTATGTTGGTGATATTTGGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAAATGATTATGGAAAAAGGATATAATGGGGGCACGGTGATTAATGTGATTATTTCCTTCCTAACTGCTTCGATGTCACTTGGGCAAGCATCCCCTAGCATGAGTGCTTTTGCTGCAGGTCAGGCTGCAGCTTATAAAATGTTCCAGACTATTGAAAGGAAGCCAGAGATAGATGCCTATGATCCAAATGGAAAAATTCTAGAGGATATTCAAGGAGAAATAGATTTAAGGGATGTTTACTTCAGTTATCCAGCAAGACCTGAGGAACTTATATTCAATGGATTTTCTCTTCATATAGCAAGTGGTACAACTGCAGCGTTAGTTGGACAAAGTGGAAGTGGAAAGTCCACGGTTATCAGCTTGATAGAAAGATTCTATGATCCACAGGCTGGTGAAATTCTTATTGATGGCATTAACCTGAAAGAATTTCAGCTTAGGTGGATCAGAGGAAAAATTGGCCTTGTCAGCCAGGAGCCCGTGTTGTTTGCCTCTAGCATTAAGGATAATATTGCTTATGGAAAGGAGGGAGCAACAATTGAAGAGATAAGATCTGCATCTGAACTCGCAAATGCTGCTAAATTCATTGATAAACTTCCACAGGGACTAAACACACTGGTTGGTGAACATGGAACTCAGTTGTCTGGTGGGCAGAAGCAACGCATTGCCATTGCAAGAGCAATCCTAAAAAATCCGAGAATTCTACTTCTGGATGAAGCCACAAGTGCACTTGACGCAGAGTCTGAAAGGATAGTGCAGGAGGCTCTAGACAGGGTCATGGTCAACAGAACAACTGTTGTAGTGGCACATCGTTTGAGTACAGTGAGAAACGCTGATATGATTGCTGTCATTCATAGAGGGAAGATGGTTGAGAATGGAACACACTCAGATTTACTAAAGGATCCTGAGGGAGCTTACTCTCAGCTTATACGCCTACAAGAAATAAGCAAGGAGACTGAACAGAATGCAGACCATCTTGGCAAGAGTGAACTTTCTGCAGAATCTCTTAGACAATCTAGTCAAAGGAGATCACTTCGAAGATCTATTAGCAGGGGGTCATCCTTAGGGAATAGTAGCCGTCATTCATTTTCAGTTTCCTTCGGTTTACCCACTGGTGTTAACGTTTCTGATCCTGAACATGAAAGCTCAACGCCCAAAGAAAAAGCACCAGAGGTTCCACTCAGCCGCCTTGCTTCCCTTAACAAGCCAGAGATTCCAGTTCTTCTACTTGGATGTGTAGCTGCCATAATAAATGGTGTTATACTTCCAATATTTGGCCTGCTGGTTTCCAGTGTCATCAAGACATTTTATGAACCATTTGATAAGATGAAGAAGGACTCCCACTTTTGGGCACTGATGTTTATGACCCTTGGTATTGTATCGTTTCTCATAATTCCTGCCCGAGGATACTTTTTCTCCGTGGCAGGAAGTAAGTTAATCCAACGTATCAGGCTAATGTGTTTCGAGAAGGTTGTCAACATGGAGGTTGGTTGGTTTGATGAGCCTGAAAACTCAAGTGGTTCAGTAGGTGCAAGGCTTTCAGCAGATGCTGCTTCAGTGCGTGCCCTTGTTGGTGATGCCCTAGGACTAGTGGTTCAAAATTTAGCCTCTGCAGTAGCCGGTTTGATCATTGCTTTTGTCGCATCTTGGCAGCTGGCACTAATTATTCTTGTCTTGATTCCCTTGATCGGAGTAAATGGATATGTTCAAATGAAATTCATGAAGGGATTCAGTGCAGATGCAAAGATGATGTACGAAGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACGGTTGCTTCTTTCTGTGCTGAAGACAATGTTATGGAACTATACAGGAAGAAATGTGAGGGTCCCATGAAAACAGGGATACGGCAAGGGTTGATCAGCGGATCAGGATTTGGGGTTTCATTTTTCTTACTGTTTTGTGTTTATGCAACCAGTTTCTACGCAGGAGCTAGACTTGTTGAAGCTGGAAAGACAACCTTCTCGGGTGTTTTCCGGGTTTTCTTTGCATTAACTATGGCAGCGATTGGAATTTCCCAATCAAGCTCCTTTGCTCCTGACTCGAGCAAAGCCAAGACAGCTACTGCTTCAATATTTGGAATAATCGATAAGAAGTCGGAGATAGACCCGAGTGATGAGTCTGGCACCACATTGGATAGTGTTAAGGGAGAAATTGAGCTTCGTCATGTGAGCTTCAAATATCCTTCTAGGCCTGACGTACAGATTTTCCGTGACCTCAGCTTGACAATCCATTCTGGCAAGACAGTAGCTCTTGTTGGTGAAAGTGGAAGTGGGAAATCCACTGTGATTGCCTTATTGCAAAGATTCTATGATCCTGATTCAGGGCAAATCACACTTGATGGGATAGAAATTCGTGAGTTACAGCTCAAGTGGTTAAGACAGCAGATGGGCCTCGTAAGCCAGGAGCCAGTTTTGTTCAATGAAACAATACGTGCCAATATTGCCTATGGAAAAGGAGGCAATGCTACTGAAGCAGAAATCACAGCTGCAGCAGAATTGGCTAATGCCCATAAATTCATTAGTGGCTTACAACAGGGTTATGATACTTTAGTGGGGGAGAGGGGAACCCAATTATCTGGTGGACAAAAGCAACGAGTAGCCATTGCACGAGCCATAATAAAAAGTCCAAAGATATTGCTGCTCGATGAGGCGACGAGTGCATTAGATGCAGAGTCAGAAAGAGTTGTTCAAGATGCATTAGACAAAGTCATGGTGAACAGAACCACTGTGGTGGTGGCACATCGTCTATCCACAATAAAAAATGCAGATGTGATTGCTGTTGTAAAAAATGGAGTCATAGTGGAAAAAGGAAAACATGAAGCACTCATCAACATCAGTGGTGGATTTTATGCTTCCTTAGTCCAACTTCACACAAGTGCTTCGACAGTATGA 3849 0.4336 MGVENDEERKHDDASTSENRAESSTNGEREEKSKQKEKPETVPFFKLFAFADSTDILLMVVGTIGAIGNGMGLPIMTLLFGQMIDSFGSNQQNANVVEAVSKVSLKFVYLAVGSGMAAFLQVTSWMVTGERQAARIRGLYLKTILRQDIVFFDKETSTGEVVGRMSGDTVLIQDAMGEKVGKFLQLIATFVGGFTVAFVKGWLLTCVMLATLPLLVFSGASMALIIGRMASRGQTAYAKASHVVEQTIGSIRTVASFTGEKQAVNNYSKFLVDAYKSGVSEGSIAAVGLGTVMLVIFGGYALAVWFGAKMIMEKGYNGGTVINVIISFLTASMSLGQASPSMSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKILEDIQGEIDLRDVYFSYPARPEELIFNGFSLHIASGTTAALVGQSGSGKSTVISLIERFYDPQAGEILIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKEGATIEEIRSASELANAAKFIDKLPQGLNTLVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVENGTHSDLLKDPEGAYSQLIRLQEISKETEQNADHLGKSELSAESLRQSSQRRSLRRSISRGSSLGNSSRHSFSVSFGLPTGVNVSDPEHESSTPKEKAPEVPLSRLASLNKPEIPVLLLGCVAAIINGVILPIFGLLVSSVIKTFYEPFDKMKKDSHFWALMFMTLGIVSFLIIPARGYFFSVAGSKLIQRIRLMCFEKVVNMEVGWFDEPENSSGSVGARLSADAASVRALVGDALGLVVQNLASAVAGLIIAFVASWQLALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDNVMELYRKKCEGPMKTGIRQGLISGSGFGVSFFLLFCVYATSFYAGARLVEAGKTTFSGVFRVFFALTMAAIGISQSSSFAPDSSKAKTATASIFGIIDKKSEIDPSDESGTTLDSVKGEIELRHVSFKYPSRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIRELQLKWLRQQMGLVSQEPVLFNETIRANIAYGKGGNATEAEITAAAELANAHKFISGLQQGYDTLVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHEALINISGGFYASLVQLHTSASTV 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5310g00006 1282 ProSitePatterns ABC transporters family signature. 521 535 IPR017871 GO:0005524|GO:0016887
Vium5310g00006 1282 Gene3D ABC transporter type 1, transmembrane domain 105 1011 IPR036640 GO:0005524|GO:0016020
Vium5310g00006 1282 CDD ABC_MTABC3_MDL1_MDL2 1037 1275 - -
Vium5310g00006 1282 Gene3D - 380 637 IPR027417 -
Vium5310g00006 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 60 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium5310g00006 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1037 1274 IPR003439 GO:0005524
Vium5310g00006 1282 CDD ABC_6TM_Pgp_ABCB1_D2_like 705 1020 - -
Vium5310g00006 1282 CDD ABC_MTABC3_MDL1_MDL2 382 620 - -
Vium5310g00006 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 716 1002 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium5310g00006 1282 CDD ABC_6TM_Pgp_ABCB1_D1_like 59 343 - -
Vium5310g00006 1282 PANTHER ABC TRANSPORTER B FAMILY 22 622 IPR039421 -
Vium5310g00006 1282 MobiDBLite consensus disorder prediction 1 38 - -
Vium5310g00006 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1274 IPR027417 -
Vium5310g00006 1282 Gene3D - 1027 1281 IPR027417 -
Vium5310g00006 1282 Pfam ABC transporter 1056 1205 IPR003439 GO:0005524
Vium5310g00006 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 618 IPR003439 GO:0005524
Vium5310g00006 1282 FunFam ABC transporter B family member 1 372 621 - -
Vium5310g00006 1282 MobiDBLite consensus disorder prediction 626 668 - -
Vium5310g00006 1282 SUPERFAMILY ABC transporter transmembrane region 46 366 IPR036640 GO:0005524|GO:0016020
Vium5310g00006 1282 SMART AAA_5 1064 1257 IPR003593 GO:0016887
Vium5310g00006 1282 SMART AAA_5 409 595 IPR003593 GO:0016887
Vium5310g00006 1282 FunFam ABC transporter B family member 9 46 378 - -
Vium5310g00006 1282 Pfam ABC transporter 401 549 IPR003439 GO:0005524
Vium5310g00006 1282 ProSitePatterns ABC transporters family signature. 1177 1191 IPR017871 GO:0005524|GO:0016887
Vium5310g00006 1282 MobiDBLite consensus disorder prediction 639 668 - -
Vium5310g00006 1282 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium5310g00006 1282 Pfam ABC transporter transmembrane region 715 987 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium5310g00006 1282 SUPERFAMILY ABC transporter transmembrane region 703 1022 IPR036640 GO:0005524|GO:0016020
Vium5310g00006 1282 FunFam ABC transporter B family member 1 695 1003 - -
Vium5310g00006 1282 FunFam ABC transporter B family member 1 1027 1277 - -
Vium5310g00006 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 620 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5310g00006 Vium-Chr5310 31889 37809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5310g00006 35 1276 Calmodulin-binding Proteins AT2G36910 44.932 0.0 1050