Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5308g00007 ATGGTGAGGGTTAGTGTGTTGAACAGAACTCTGAAGAGCATGTACAATGCTGAGAAAAGAGGAAAGCTCCAAGTCATGATTAGGCCATCGTCCAAGGTCATTATCAAATTTCTTTTGGTGATGCAAAAGCACGGTTACATTGGAGAGTTTGAGTATGTTGATGACCATAGGACTGGTAAAATCGTGGTTGAATTGAATGGTAGACTGAACAACTGTGGGGTTATTAGCCCCCGTTTTGATGTGAGTGTCAAAGATATAGAACCTTGTACTGCTAGGCTTCTCCCCTCAAGGCAATTTGGTTATATTGTATTGACTACCTTTGTTGGCATCATGGATCATGAAGAGGCTAGGAGAAATAATGTTGGTGTTAAGGTCCTAGGTTTCTTCTACTACGTTATTTTCAATTGA 408 0.4044 MVRVSVLNRTLKSMYNAEKRGKLQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRTGKIVVELNGRLNNCGVISPRFDVSVKDIEPCTARLLPSRQFGYIVLTTFVGIMDHEEARRNNVGVKVLGFFYYVIFN 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5308g00007 135 Gene3D - 70 130 - -
Vium5308g00007 135 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 129 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vium5308g00007 135 Gene3D - 1 69 - -
Vium5308g00007 135 FunFam 40S ribosomal protein S15a 1 69 - -
Vium5308g00007 135 Pfam Ribosomal protein S8 9 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vium5308g00007 135 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vium5308g00007 135 FunFam 40S ribosomal protein S15a 70 130 - -
Vium5308g00007 135 SUPERFAMILY Ribosomal protein S8 4 130 IPR035987 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5308g00007 Vium-Chr5308 92355 93413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5308g00007 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 88.462 3.57e-82 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5308g00007 K02957 - vvi:100243108 234.958