Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5308g00006 TTGAGTGAATGTGCATGGACCAGGTACTTGACAGGTTTCCTACATTTCACGGGCATTAATTTCATTTTGACATTTGTTGCTGCTATTCTGTGCGTGTGTTTTGCACCCATAGCAGCAGGACCTGGAATTCTTGAAATCAAAGCTTATCTTAATGGTGTTGATACCAACATGTTTGGTGCTACAACATTGATTATCAAAATAATTGGAAGCATTGGAGCTGTCTCTGCAGGACTAGATTTGGGAAAAGAAGGACCGTTGGTACACATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCCGACAATTACAGGATCAAATGGCGTTGGCTTCGATATTTTAACAATGATCGTGACCGTCGGGATCTTATCACCTGTGGTTCATCTTCGGGAGTTTGTGCAGCTTTCCGGGCTCCAGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTACTCTGGAGAACCTTTTTTAGCACAGCTGTGGTGGTGGTGGTTCTCAGGGCCTTCATTGAAATCTGCAATTCTGGAAAATGTGGCCTTTTTGGTGAAGGAGGTCTGATTATGTTTGATGTAAGCAATGTCACAGTGAGGTACCATGCTATGGATATTGTCATCGTTGTAGTCATTGGTATCATAGGCGGGGTATTGGGAAGCCTTTACAATCATGTGCTACACAAGATCCTCAGACTCTACAATCTCATCAATCAGAAAGGAAAGATACATAAACTCCTCCTCAGTCTTGCAGTTGCACTCTTCACATCTATGTGCCAATATGGTCTCCCATTCTTAGCAAAATGTACCCCATGTGATTCATCGATTCCAGAGTCAGCATGCCCCACCAATGGACGATCCGGAAATTTCAAACAATTCAACTGTCCACCTGGCTTCTATAACGATCTGGCCACTCTGCTGCTTACCACTAATGACGATGCTGTTCGAAACATATTCTCAACCAACACCCCTCTAGAATATCAACCCATGTCCCTCCTAATTTTCTTTGTACTATATTGCATATTAGGACTAGTTACTTTTGGAATTGCAGTGCCATCTGGGCTTTTCCTCCCAATTATTCTTATGGGCTCAGGTTATGGACGCCTTCTTGGCTTCTATATGGGGCCTCATACAAACATTGACCAAGGGCTGTTTGCCGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACGGTATCCCTTTGTGTGATCTTTCTAGAACTCACCAATAATCTTCTTCTATTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTGGGAGACAGTTTCAACCCAAGTATCTATGAAATTATACTGCACTTGAAAGGTCTCCCTTTCATGGATGCAAACCCCGAGCCATGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCATCGGTGATTACCCTCCACGGAATAGAGAAGGTATCTAAAATAGTAGATGTCTTGAAAAACACTACGCATAATGGCTTTCCTGTTTTGGATGATGGGGTAGTAGTACCACCAGTAGTAGGACATGCCAATGGAGCAACAGAGTTGCATGGACTAGTTTTAAGAGCACATCTCATCCAAGCACTAAAGAAGAAGTGGTTCTTTAAAGAAAGAAGGAGAACAATGGACTGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTTGCTGAGAGAGAAGGAAGTATTGAAGGGGTGGCTGTGACCAGCGAGGAAATGGAGATGTTTGTAGATCTACATCCTCTAACCAATACAACTCCCTTTACCGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATTCTCTTCAGGCAAGTTGGACTTCGTCATCTGCTTGTAGTTCCCAAGTATCAAGCATCCGGGGTATCCCCAGTAATTGGGATCTTGACCAGGCAAGATCTTCTGGCACACAACATTTTGACAGTCTTTCCTCAGCTGGCAAAATCTAAGAGCAGAGGAAAAAGAAATTGA 1998 0.4399 LSECAWTRYLTGFLHFTGINFILTFVAAILCVCFAPIAAGPGILEIKAYLNGVDTXNMFGATTLIIKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGEGGLIMFDVSNVTVRYHAMDIVIVVVIGIIGGVLGSLYNHVLHKILRLYNLINQKGKIHKLLLSLAVALFTSMCQYGLPFLAKCTPCDSSIPESACPTNGRSGNFKQFNCPPGFYNDLATLLLTTNDDAVRNIFSTNTPLEYQPMSLLIFFVLYCILGLVTFGIAVPSGLFLPIILMGSGYGRLLGFYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVITLHGIEKVSKIVDVLKNTTHNGFPVLDDGVVVPPVVGHANGATELHGLVLRAHLIQALKKKWFFKERRRTMDWEVREKFTWVELAEREGSIEGVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPQLAKSKSRGKRN 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5308g00006 666 PRINTS Plant CLC chloride channel signature 166 176 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium5308g00006 666 PRINTS Plant CLC chloride channel signature 184 191 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium5308g00006 666 PRINTS Plant CLC chloride channel signature 309 325 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium5308g00006 666 PRINTS Plant CLC chloride channel signature 152 160 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vium5308g00006 666 CDD CBS_pair_voltage-gated_CLC_euk_bac 478 647 - -
Vium5308g00006 666 SMART cbs_1 480 541 IPR000644 -
Vium5308g00006 666 SMART cbs_1 596 649 IPR000644 -
Vium5308g00006 666 Pfam CBS domain 595 645 IPR000644 -
Vium5308g00006 666 SUPERFAMILY CBS-domain pair 462 646 IPR046342 -
Vium5308g00006 666 Gene3D Clc chloride channel 1 460 - -
Vium5308g00006 666 SUPERFAMILY Clc chloride channel 8 460 IPR014743 -
Vium5308g00006 666 Gene3D - 461 651 IPR046342 -
Vium5308g00006 666 Pfam Voltage gated chloride channel 24 438 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium5308g00006 666 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 11 651 - -
Vium5308g00006 666 PRINTS Chloride channel signature 131 150 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium5308g00006 666 PRINTS Chloride channel signature 36 53 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium5308g00006 666 PRINTS Chloride channel signature 445 459 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium5308g00006 666 PRINTS Chloride channel signature 67 86 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium5308g00006 666 PRINTS Chloride channel signature 357 377 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium5308g00006 666 PRINTS Chloride channel signature 389 405 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium5308g00006 666 PRINTS Chloride channel signature 407 426 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vium5308g00006 666 ProSiteProfiles CBS domain profile. 593 659 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5308g00006 Vium-Chr5308 87846 91986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5308g00006 8 660 Ion Channels AT3G27170 80.398 0.0 1067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5308g00006 K05016 - gmx:100788620 1205.28