Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium5306g00006 | ATGTCGGAAGGGTTCGCGATCGAACTGTACTTGGATCCGGCGTTGGAGAATCAGGTGCTCAAGGCATGGAACGTTCTTGCGCGCCGACAAATCACCACTCACCTCATCGAGATGGAGTCGCGCCCTCACATAACGCTCTTCTCCGCACCCTTTCTAGAACCTTCCAAGCTCGAATCGCTCCTCAGAACCTTCGCATCCAAGCACGATCCTCTCTCTCTCTCCTTCTCCTCCGTCGGCACCTTCCCCAACCACGCCGACAACCTGCTCTTCCTGGCGCCGACGCCCTCCCTCTCCCTCCTCCAATTCCAGTCCCACCTCTGCGACGCCATCAGAAAAGAAGGTATTGAGATCTCCGACGACTTCGCCTTCAATTCCTGGATACCTTACTGCTCGGTCGCACACCACGTCCCCAAAAACAGAATGCCCGAGGCTTTCTCCCTCTTGCGGGAACTCAAGCTGCCGGTTTCCGGTTACGCTACGGACATCGCGCTCGTGCAGTTCTCTCCGGTTCGCGAACTCTTCTCCTTTGTGCTCGGTAATAATGTAGACTCCTGA | 555 | 0.5622 | MSEGFAIELYLDPALENQVLKAWNVLARRQITTHLIEMESRPHITLFSAPFLEPSKLESLLRTFASKHDPLSLSFSSVGTFPNHADNLLFLAPTPSLSLLQFQSHLCDAIRKEGIEISDDFAFNSWIPYCSVAHHVPKNRMPEAFSLLRELKLPVSGYATDIALVQFSPVRELFSFVLGNNVDS | 184 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium5306g00006 | 184 | Pfam | 2'-5' RNA ligase superfamily | 41 | 166 | - | - | |
Vium5306g00006 | 184 | Gene3D | Cyclic phosphodiesterase | 5 | 180 | - | - | |
Vium5306g00006 | 184 | PANTHER | - | 1 | 182 | - | - | |
Vium5306g00006 | 184 | SUPERFAMILY | LigT-like | 5 | 165 | IPR009097 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium5306g00006 | Vium-Chr5306 | 73195 | 74127 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium5306g00006 | 1 | 184 | Calmodulin-binding Proteins | AT5G40190 | 62.500 | 2.59e-80 | 234 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium5306g00006 | - | - | pvu:PHAVU_004G019100g | 361.688 |