Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5306g00006 ATGTCGGAAGGGTTCGCGATCGAACTGTACTTGGATCCGGCGTTGGAGAATCAGGTGCTCAAGGCATGGAACGTTCTTGCGCGCCGACAAATCACCACTCACCTCATCGAGATGGAGTCGCGCCCTCACATAACGCTCTTCTCCGCACCCTTTCTAGAACCTTCCAAGCTCGAATCGCTCCTCAGAACCTTCGCATCCAAGCACGATCCTCTCTCTCTCTCCTTCTCCTCCGTCGGCACCTTCCCCAACCACGCCGACAACCTGCTCTTCCTGGCGCCGACGCCCTCCCTCTCCCTCCTCCAATTCCAGTCCCACCTCTGCGACGCCATCAGAAAAGAAGGTATTGAGATCTCCGACGACTTCGCCTTCAATTCCTGGATACCTTACTGCTCGGTCGCACACCACGTCCCCAAAAACAGAATGCCCGAGGCTTTCTCCCTCTTGCGGGAACTCAAGCTGCCGGTTTCCGGTTACGCTACGGACATCGCGCTCGTGCAGTTCTCTCCGGTTCGCGAACTCTTCTCCTTTGTGCTCGGTAATAATGTAGACTCCTGA 555 0.5622 MSEGFAIELYLDPALENQVLKAWNVLARRQITTHLIEMESRPHITLFSAPFLEPSKLESLLRTFASKHDPLSLSFSSVGTFPNHADNLLFLAPTPSLSLLQFQSHLCDAIRKEGIEISDDFAFNSWIPYCSVAHHVPKNRMPEAFSLLRELKLPVSGYATDIALVQFSPVRELFSFVLGNNVDS 184
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium5306g00006 184 Pfam 2'-5' RNA ligase superfamily 41 166 - -
Vium5306g00006 184 Gene3D Cyclic phosphodiesterase 5 180 - -
Vium5306g00006 184 PANTHER - 1 182 - -
Vium5306g00006 184 SUPERFAMILY LigT-like 5 165 IPR009097 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium5306g00006 Vium-Chr5306 73195 74127 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5306g00006 1 184 Calmodulin-binding Proteins AT5G40190 62.500 2.59e-80 234
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5306g00006 - - pvu:PHAVU_004G019100g 361.688