Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5306g00005 ATGGTGGCACAGTTTCACGCGTTTAAACCTAACACAAACGTAATCGGAACGTTCTTCTCCCAAAACGCACGTTTTAAAGAAGTCCTTTCTCTCTTCTTCTTGTTCTTGATCTTCTTCTTGGATTTGCAATCTGTGGTGAAATCTGGTTTGGAATTTGGTGAAGTGGAATCGAAGAGTGTTTCAATGTCGGAAGGGTTTGCGATCGAATTGCACTTGGATCCGGCGTTGGAGAATCAGGTGCTGAAGGCGTGGAACGTTCTCGCGCGCCGGCAAATCACCACTCACCTCATCGAGATGAAGTCGCGCCCTCACAAAACGCTCTTCTCCGCACCCTTTCTAGAACCTTCCAAGCTCGAATCGCTTCTCAGAACCTTCGCATCCAAACACGATCCTCTTTCTCTCTCCTTCTCCTCCGTCGGCACCATCCCCAACCACGCCGACAATCTCCTATTCCTAGCGCCCACGCCCTCCCTCTCCCTCCTCCAATTCCAGTCCCACCTCTGCGACGCCATCAGAAAAGAAGGTATTGAGATCTCCGACGACTTCGCCTTCGATTCCTGGATACCTTACTGCTCGGTCGCACACCACGTCGCCAAAAACAAAATGCCCGAGGCTTTCTCTCTCTTGCGGGAACTTAAGCTGCCGGTTTCCGGTTACGCTACGGACATCGCGCTCGTGCAGTTCTCTCCGGTTAGCGAACTCTTCTCCTTTGTGCTCGGCAACAATGTAGATTCCTGA 738 0.5136 MVAQFHAFKPNTNVIGTFFSQNARFKEVLSLFFLFLIFFLDLQSVVKSGLEFGEVESKSVSMSEGFAIELHLDPALENQVLKAWNVLARRQITTHLIEMKSRPHKTLFSAPFLEPSKLESLLRTFASKHDPLSLSFSSVGTIPNHADNLLFLAPTPSLSLLQFQSHLCDAIRKEGIEISDDFAFDSWIPYCSVAHHVAKNKMPEAFSLLRELKLPVSGYATDIALVQFSPVSELFSFVLGNNVDS 245
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium5306g00005 245 PANTHER - 62 243 - -
Vium5306g00005 245 Pfam 2'-5' RNA ligase superfamily 100 227 - -
Vium5306g00005 245 Gene3D Cyclic phosphodiesterase 66 240 - -
Vium5306g00005 245 SUPERFAMILY LigT-like 67 225 IPR009097 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium5306g00005 Vium-Chr5306 69293 70191 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5306g00005 62 245 Calmodulin-binding Proteins AT5G40190 59.239 3.23e-74 222