Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5306g00003 ATGCATGGGTGTGGTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTCTTCAAGCCACCTAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGCTAACTTATGATAAACAAGAAAGTCCAAGTTTAGAAGTACATTGGCTTTACCGACCTGCTGATTTAAAACTTGCCAAAGGAATTGTGCTGGAAGCTGCACCGAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACAACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAGCATCAACACAGTCTTTGAAATCTGGTTCTGACAACATACAAAATAGTTCTTCGTTTGGTGCACAGGGTAAGGGTAAAAAGAGAGAGCGGGGTGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTGTTTAAGATAGAAGATGGAGATTCTGGTCAGTTTAGACCGGAGAGCATGTTAAAGTCCGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTTATGCAGCCTGACAGTGCTGATAAAAAGATTGATTTACCTGGGCGGATAATGCTTGTTGATGTAATTGCACTTACAGACCGGTACGATTGTCTGGGCTGGTTTGTACAGCTTAGGGGTTTACCTGTATTGGACGAATGGCTGCAGGAGGTCCACAAGGGCAAAATTGGTGATGGAAATCCCAAAGAAGGTGACAAGTCTGTTGATGATTTTTTATTAGCTTTACTGCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAGACCTGTAATGTTGGAAAGTCTGTCAATCATTTACGCACGCACAAGAATGCTGAAATTCAGAGGAAAGCCCGGAGTTTAGTGGACACATGGAAGAGGCGTGTGGAAGCTGAAATGAACATGAATGATTCAAAGTCTGGTTCAAACCGTGCTGTTTCTTGGCCAGCAAAGCCAGCAAACTCGGAGTCTCCTCATGTTGGAAATAGGAAAACAGGTGGGTCCTCTGATAACGTCGTGAAGAGCTCTGTAATTCAACCCTCATTATCTAAAAGTTCCCAATCTAAGTTAAGTTCTGGAGAAGCTTTGTCAAAGTCTTCATCTCCTGGCTCTACTAAATCATTGACTACCCCCGCAGGCGTGAATTCAAAAGATCAAAACAGTAAATTCTTTGTTGGAGCTGCAACGTCAGATCTACCTTTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATAACTTGTTCTAGTGAACATGCTAAGACTATTGGTTCTTGCAAGGAAGATGCAAAGAGCTCCACTGCAATGTCAATGAGTGGAAGTAAAATTCATGGTTGTACATCTCGAAATCGCAAGTCAAGCAATGGTGTACATGGGGCTGGTGCTGCAGTAGGTCAAAAGGAGCACAACTCTGCAAAACATTCAACAAGAAATTCACCTTCTGAGAAAGTATCACCAACTCGAGCATCCCACGAAAAATCAGTTGACCAGGCCATTGCCGATCAAGGGAATAACCAGCGATTGATTCTTAGGTTGCCAAACACTGGTCGCAGTCCATCAAGGGGAGCTAGCGGGGGCTCTTTTGAAGAACCAGCTACAACGAGCAGCAAAGTTTCATCTCCTGCAGACCGGAATGATAATCAGGACAGAAGAGTGAAAACTAAGACCGAGTGTTTGCTGACCCATGTGTCAAATATGATGAATGAGGCTTGTGATGCTAATGATGCTAATGATGCTTTGATTGGTGATGAAGGTAAGGGTACTCCAGTAGTTGATGAGCGAAGCAGGGCAAATGAAGATAGTGATAAGGTATTGGAAACATCAAAGCCGACTAGTTTGCCATCTGGGTTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGCTGTGTAAAGTTTTCTGAAGCAAGTTCATCCGTTTCCCATGGAGATGATGGGATGAACCTACTAGCTACTGTGGCTGCTGGGGAAATATCCAGATCAGAAAATGCGTCACCTGTGGCATCCCCCGAGAGAAAGTCTCCTGCAGGAGATGAAATGTGCTCAGGCAATGATTTGAAGTTAAAGCATTCTGGTGAAGCAGCTGTTCGCACTCTTTCAGAGTTGAATGGTAGGGCTACAGGAGAGCATCCTTTGAATACAGTTGATTCATTGCATATAAAAAATGAGTTGAGGCATCCTGCCATGACTCTGTCACGTGATTTTTCAGGGGATGGTGAAACCATTTCATCTTCCCATAACACTAATATACATATCTCCCCTACAAATTTGTCACAAAATGTTGAAGGTCCATGCTTACGGCCCGAAACCAAAGAAAATGCTTCTGTCACTATTCTGACAGCTAAAAAGGAGAGTAATGCAGACACTGGAGTTTCAGACTCTAAATTAATGCCAAGGGCCTACTCTTTGGATGATGATCAGAAGGTTGATCACATGAAAGAGGAGATCATTGAGGATGAGAAAATGTTGGTTTCAAAACCTGTTACAAATGTTGAGTCAGAAAACGAATCTGGTGAAAAGCAGCCGGAGTTAACTTCAGGTGTGGATAATGAGAACCAGATTAGTCTGGAGAAAGCAACTGGTACTGGAATACTAGCGCAAAAGGCCTCTCCAATTGCTGAAAACTGTGAGTCTGCATATTTAAAAAAGGAGTCACCTGCTTCTGGCAATGCTTTAATTGTACCCAAGGATGAAAGTGCTGATGACATGAAGTCAGTTGTGATTGAGCCTGAGGTAAGACCAATGGACCAGGATTCTTCTGCTCCAGAGGATTCTTATGAATGTGCTGAAGTTAATACGGGCAAAAAAGAAACCATTGGTCCGTGTTCTGGTTCATCAGTTCAGCCTGATTTACAAGGAGTGTCTAGGACAGAGAGTGAAGTGTCCAAATCATGTGAGCAAAAGCTAGATGCAAATCTGTCTGAAGTATCAGGAGAGAGGCATGCATGCTCTGCAGCTGGTGCTGATGCAGCTGTGAAACTTGACTTTGATTTAAATGAAGGCTTTCCTGTTGATGATGTAAGTCAAGGGGAGATTGCCAGACAGGATGATCCTATCACATCATCTGCAGTTCATGTTCCTTGCCCATTGCCTTTTCCTATTTCGTCCATCTCTGGTGGCTTCCACCCTTCAATTACCGTTGCATCCGCCGCTAAAGGGCCTGTTATTCCACCAGAAAACCCATTGAGGATCAAGGGGGAGCTTGGATGGAAAGGATCTGCTGCCACCAGTGCATTTCGACCAGCTGAACCTAGGAAAAATGCTGAGATGCAGTCCTCTACTAATGATATTAGTTCTGTTGATGTCACTTCTATCAAACAAAATCGCGCCCCCTTAGATTTTGACTTGAATGTGGCAGATGAAAGATGTTTTGAAGATGTTGGTTCACATGGTTCTTTAGATTCTGGACCACATGATCGTAGTTTGGGACTTGATCTTGATTTAAACAGAGTTGATGAGACTCCTGAAATTGGTACTTTCTCTATAACCAAACTGGATATCCCTGTTTTACCAAGCAAGCCGTCATTGTCTAGTGGGTTGTCTAATGGTGGAAGTGTCTCAAGAGACTTTGACTTAAATAACGGGCCTGGCCTAGAAGAAGTTGGTAGTGAAGTCCCTACACGTAGTCAGCAGCAGATGAAAAATTCTGTGCCGTTTCCAAGTGCTGTTCATAGCACGAGAACAAACAATGCTGAATATGGAAATTATTCTGCATGGTTTCCTCCTGGAAATTCCTATTCTGCAATTACTGTCTCGCCACTTCTATCTGGTAGAGGGGAGCAGAGTTATGTTACTGGTGCTGGGGCACAACGAATAATGGGTCCAACAGGTAGCACTCCTTTTGGTCCTGAAATCTACAGGGGATCAGTACTTTCATCCTCACCGGCTGTTGCTTATCCATCCACTACAGCTTTTCCATATCCTGGATTTCCATTTGAAACCAATTTTCCATTATCCTCAAACTCCTTTTCTGGTTCAACTGCATTTATGGATTCGTCGAATGTGGGCGGGCTATGTTTTCCTACCATGCCTACACAGCCAGTTGGGCCTGGTGGTGTCGTTTCATCCACATATCCTCGTCCATATGTTATGAGTCTTCCAGGTGGTACTAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGTAGCAGATACAGAACGGAGGGACGAAAGATTGCCTTCAGGATTGCGGCAAATGTCTGTCCCGAACCCACAAGCCTCAATTGAGGACCACTTGAAGATGTTTCAGATGGCAGGTGCTGCTGCATTGAAAAGAAAAGAGCCTGATGGTGGTTGGGATGCTGAAAGATTCGGTTATAAGCAACACTCACGGCAATAG 4701 0.4395 MHGCGGDQWKHNRHMWPVPANATTDGRKIRAGDCALFKPPRDSPPFIGIIRKLTYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEQQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPASTQSLKSGSDNIQNSSSFGAQGKGKKRERGDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSADKKIDLPGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNPKEGDKSVDDFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNAEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDNVVKSSVIQPSLSKSSQSKLSSGEALSKSSSPGSTKSLTTPAGVNSKDQNSKFFVGAATSDLPLTPIKEERSSSSSQSQNNSITCSSEHAKTIGSCKEDAKSSTAMSMSGSKIHGCTSRNRKSSNGVHGAGAAVGQKEHNSAKHSTRNSPSEKVSPTRASHEKSVDQAIADQGNNQRLILRLPNTGRSPSRGASGGSFEEPATTSSKVSSPADRNDNQDRRVKTKTECLLTHVSNMMNEACDANDANDALIGDEGKGTPVVDERSRANEDSDKVLETSKPTSLPSGFVSRSGQTYDASLSPMNALVESCVKFSEASSSVSHGDDGMNLLATVAAGEISRSENASPVASPERKSPAGDEMCSGNDLKLKHSGEAAVRTLSELNGRATGEHPLNTVDSLHIKNELRHPAMTLSRDFSGDGETISSSHNTNIHISPTNLSQNVEGPCLRPETKENASVTILTAKKESNADTGVSDSKLMPRAYSLDDDQKVDHMKEEIIEDEKMLVSKPVTNVESENESGEKQPELTSGVDNENQISLEKATGTGILAQKASPIAENCESAYLKKESPASGNALIVPKDESADDMKSVVIEPEVRPMDQDSSAPEDSYECAEVNTGKKETIGPCSGSSVQPDLQGVSRTESEVSKSCEQKLDANLSEVSGERHACSAAGADAAVKLDFDLNEGFPVDDVSQGEIARQDDPITSSAVHVPCPLPFPISSISGGFHPSITVASAAKGPVIPPENPLRIKGELGWKGSAATSAFRPAEPRKNAEMQSSTNDISSVDVTSIKQNRAPLDFDLNVADERCFEDVGSHGSLDSGPHDRSLGLDLDLNRVDETPEIGTFSITKLDIPVLPSKPSLSSGLSNGGSVSRDFDLNNGPGLEEVGSEVPTRSQQQMKNSVPFPSAVHSTRTNNAEYGNYSAWFPPGNSYSAITVSPLLSGRGEQSYVTGAGAQRIMGPTGSTPFGPEIYRGSVLSSSPAVAYPSTTAFPYPGFPFETNFPLSSNSFSGSTAFMDSSNVGGLCFPTMPTQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVADTERRDERLPSGLRQMSVPNPQASIEDHLKMFQMAGAAALKRKEPDGGWDAERFGYKQHSRQ 1566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5306g00003 1566 ProSiteProfiles BAH domain profile. 27 142 IPR001025 GO:0003682
Vium5306g00003 1566 Pfam BAH domain 29 134 IPR001025 GO:0003682
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 1185 1205 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 205 236 - -
Vium5306g00003 1566 CDD TFIIS_I 316 391 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 1284 1333 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 1488 1513 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 393 479 - -
Vium5306g00003 1566 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 296 404 IPR035441 -
Vium5306g00003 1566 SMART TFS2_5 314 392 IPR003617 GO:0005634
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 177 204 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 1314 1333 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 1547 1566 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 1284 1299 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 939 960 - -
Vium5306g00003 1566 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1566 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 1545 1566 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 497 556 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 165 237 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 598 643 - -
Vium5306g00003 1566 ProSiteProfiles TFIIS N-terminal domain profile. 308 393 IPR017923 -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 419 479 - -
Vium5306g00003 1566 Gene3D - 20 240 IPR043151 -
Vium5306g00003 1566 Pfam TFIIS helical bundle-like domain 341 390 IPR017923 -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 396 411 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 683 721 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 688 707 - -
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 495 653 - -
Vium5306g00003 1566 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 259 394 IPR035441 -
Vium5306g00003 1566 SMART BAH_4 27 142 IPR001025 GO:0003682
Vium5306g00003 1566 MobiDBLite consensus disorder prediction 770 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5306g00003 Vium-Chr5306 56513 63416 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium5306g00003 BAH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5306g00003 - - gmx:112998769 2464.11