Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5306g00002 ATGCATGGGTGTGGTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTGTACCTGCTAACGCGACCACTGTAGCCATCGATTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTCTTCAAGCCACCTAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGCTAACTTATGATAAACAAGAAAGTCCAAGTTTAGAAGTACATTGGCTTTACCGACCTGCTGATTTAAAACTTGCCAAAGGAATTGTGCTGGAAGCTGCACCGAACGAAGTTTTTTACTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACAACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCAGCATCAACACAGTCTTTGAAATCTGGTTCTGACAACATACAAAATAGTTCTTCGTTTGGTGCACAGGGTAAGGGTAAAAAGAGAGAGCGGGGTGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTGTTTAAGATAGAAGATGGAGATTCTGGTCAGTTTAGACCGGAGAGCATGTTAAAGTCCGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTTATGCAGCCTGACAGTGCTGATAAAAAGATTGATTTACCTGGGCGGATAATGCTTGTTGATGTAATTGCACTTACAGACCGGTACGATTGTCTGGGCTGGTTTGTACAGCTTAGGGGTTTACCTGTATTGGACGAATGGCTGCAGGAGGTCCACAAGGGCAAAATTGGTGATGGAAATCCCAAAGAAGGTGACAAGTCTGTTGATGATTTTTTATTAGCTTTACTGCGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAGACCTGTAATGTTGGAAAGTCTGTCAATCATTTACGCACGCACAAGAATGCTGAAATTCAGAGGAAAGCCCGGAGTTTAGTGGACACATGGAAGAGGCGTGTGGAAGCTGAAATGAACATGAATGATTCAAAGTCTGGTTCAAACCGTGCTGTTTCTTGGCCAGCAAAGCCAGCAAACTCGGAGTCTCCTCATGTTGGAAATAGGAAAACAGGTGGGTCCTCTGATAACGTCGTGAAGAGCTCTGTAATTCAACCCTCATTATCTAAAAGTTCCCAATCTAAGTTAAGTTCTGGAGAAGCTTTGTCAAAGTCTTCATCTCCTGGCTCTACTAAATCATTGACTACCCCCGCAGGCGTGAATTCAAAAGATCAAAACAGTAAATTCTTTGTTGGAGCTGCAACGTCAGATCTACCTTTGACACCTATCAAAGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATAACTTGTTCTAGTGAACATGCTAAGACTATTGGTTCTTGCAAGGAAGATGCAAAGAGCTCCACTGCAATGTCAATGAGTGGAAGTAAAATTCATGGTTGTACATCTCGAAATCGCAAGTCAAGCAATGGTGTACATGGGGCTGGTGCTGCAGTAGGTCAAAAGGAGCACAACTCTGCAAAACATTCAACAAGAAATTCACCTTCTGAGAAAGTATCACCAACTCGAGCATCCCACGAAAAATCAGTTGACCAGGCCATTGCCGATCAAGGGAATAACCAGCGATTGATTCTTAGGTTGCCAAACACTGGTCGCAGTCCATCAAGGGGAGCTAGCGGGGGCTCTTTTGAAGAACCAGCTACAACGAGCAGCAAAGTTTCATCTCCTGCAGACCGGAATGATAATCAGGACAGAAGAGTGAAAACTAAGACCGAGTGTTTGCTGACCCATGTGTCAAATATGATGAATGAGGCTTGTGATGCTAATGATGCTAATGATGCTTTGATTGGTGATGAAGGTAAGGGTACTCCAGTAGTTGATGAGCGAAGCAGGGCAAATGAAGATAGTGATAAGGTATTGGAAACATCAAAGCCGACTAGTTTGCCATCTGGGTTTGTTTCCAGATCAGGGCAGACTTATGATGCTTCTTTAAGCCCCATGAATGCATTAGTTGAAAGCTGTGTAAAGTTTTCTGAAGCAAGTTCATCCGTTTCCCATGGAGATGATGGGATGAACCTACTAGCTACTGTGGCTGCTGGGGAAATATCCAGATCAGAAAATGCGTCACCTGTGGCATCCCCCGAGAGAAAGTCTCCTGCAGGAGATGAAATGTGCTCAGGCAATGATTTGAAGTTAAAGCATTCTGGTGAAGCAGCTGTTCGCACTCTTTCAGAGTTGAATGGTAGGGCTACAGGAGAGCATCCTTTGAATACAGTTGATTCATTGCATATAAAAAATGAGTTGAGGCATCCTGCCATGACTCTGTCACGTGATTTTTCAGGGGATGGTGAAACCATTTCATCTTCCCATAACACTAATATACATATCTCCCCTACAAATTTGTCACAAAATGTTGAAGGTCCATGCTTACGGCCCGAAACCAAAGAAAATGCTTCTGTCACTATTCTGACAGCTAAAAAGGAGAGTAATGCAGACACTGGAGTTTCAGACTCTAAATTAATGCCAAGGGCCTACTCTTTGGATGATGATCAGAAGGTTGATCACATGAAAGAGGAGATCATTGAGGATGAGAAAATGTTGGTTTCAAAACCTGTTACAAATGTTGAGTCAGAAAACGAATCTGGTGAAAAGCAGCCGGAGTTAACTTCAGGTGTGGATAATGAGAACCAGATTAGTCTGGAGAAAGCAACTGGTACTGGAATACTAGCGCAAAAGGCCTCTCCAATTGCTGAAAACTGTGAGTCTGCATATTTAAAAAAGGAGTCACCTGCTTCTGGCAATGCTTTAATTGTACCCAAGGATGAAAGTGCTGATGACATGAAGTCAGTTGTGATTGAGCCTGAGGTAAGACCAATGGACCAGGATTCTTCTGCTCCAGAGGATTCTTATGAATGTGCTGAAGTTAATACGGGCAAAAAAGAAACCATTGGTCCGTGTTCTGGTTCATCAGTTCAGCCTGATTTACAAGGAGTGTCTAGGACAGAGAGTGAAGTGTCCAAATCATGTGAGCAAAAGCTAGATGCAAATCTGTCTGAAGTATCAGGAGAGAGGCATGCATGCTCTGCAGCTGGTGCTGATGCAGCTGTGAAACTTGACTTTGATTTAAATGAAGGCTTTCCTGTTGATGATGTAAGTCAAGGGGAGATTGCCAGACAGGATGATCCTATCACATCATCTGCAGTTCATGTTCCTTGCCCATTGCCTTTTCCTATTTCGTCCATCTCTGGTGGCTTCCACCCTTCAATTACCGTTGCATCCGCCGCTAAAGGGCCTGTTATTCCACCAGAAAACCCATTGAGGATCAAGGGGGAGCTTGGATGGAAAGGATCTGCTGCCACCAGTGCATTTCGACCAGCTGAACCTAGGAAAAATGCTGAGATGCAGTCCTCTACTAATGATATTAGTTCTGTTGATGTCACTTCTATCAAACAAAATCGCGCCCCCTTAGATTTTGACTTGAATGTGGCAGATGAAAGATGTTTTGAAGATGTTGGTTCACATGGTTCTTTAGATTCTGGACCACATGATCGTAGTTTGGGACTTGATCTTGATTTAAACAGAGTTGATGAGACTCCTGAAATTGGTACTTTCTCTATAACCAAACTGGATATCCCTGTTTTACCAAGCAAGCCGTCATTGTCTAGTGGGTTGTCTAATGGTGGAAGTGTCTCAAGAGACTTTGACTTAAATAACGGGCCTGGCCTAGAAGAAGTTGGTAGTGAAGTCCCTACACGTAGTCAGCAGCAGATGAAAAATTCTGTGCCGTTTCCAAGTGCTGTTCATAGCACGAGAACAAACAATGCTGAATATGGAAATTATTCTGCATGGTTTCCTCCTGGAAATTCCTATTCTGCAATTACTGTCTCGCCACTTCTATCTGGTAGAGGGGAGCAGAGTTATGTTACTGGTGCTGGGGCACAACGAATAATGGGTCCAACAGGTAGCACTCCTTTTGGTCCTGAAATCTACAGGGGATCAGTACTTTCATCCTCACCGGCTGTTGCTTATCCATCCACTACAGCTTTTCCATATCCTGGATTTCCATTTGAAACCAATTTTCCATTATCCTCAAACTCCTTTTCTGGTTCAACTGCATTTATGGATTCGTCGAATGTGGGCGGGCTATGTTTTCCTACCATGCCTACACAGCCAGTTGGGCCTGGTGGTGTCGTTTCATCCACATATCCTCGTCCATATGTTATGAGTCTTCCAGGTGGTACTAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGTAGCAGATACAGAACGGAGGGACGAAAGATTGCCTTCAGGATTGCGGCAAATGTCTGTCCCGAACCCACAAGCCTCAATTGAGGACCACTTGAAGATGTTTCAGATGGCAGGTGCTGCTGCATTGAAAAGAAAAGAGCCTGATGGTGGTTGGGATGCTGAAAGATTCGGTTATAAGCAACACTCACGGCAATAG 4740 0.439 MHGCGGDQWKHNRHMWPVPANATTVAIDSSPSQFICKDGRKIRAGDCALFKPPRDSPPFIGIIRKLTYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEQQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPASTQSLKSGSDNIQNSSSFGAQGKGKKRERGDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSADKKIDLPGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNPKEGDKSVDDFLLALLRALDKLPVNLHALQTCNVGKSVNHLRTHKNAEIQRKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDNVVKSSVIQPSLSKSSQSKLSSGEALSKSSSPGSTKSLTTPAGVNSKDQNSKFFVGAATSDLPLTPIKEERSSSSSQSQNNSITCSSEHAKTIGSCKEDAKSSTAMSMSGSKIHGCTSRNRKSSNGVHGAGAAVGQKEHNSAKHSTRNSPSEKVSPTRASHEKSVDQAIADQGNNQRLILRLPNTGRSPSRGASGGSFEEPATTSSKVSSPADRNDNQDRRVKTKTECLLTHVSNMMNEACDANDANDALIGDEGKGTPVVDERSRANEDSDKVLETSKPTSLPSGFVSRSGQTYDASLSPMNALVESCVKFSEASSSVSHGDDGMNLLATVAAGEISRSENASPVASPERKSPAGDEMCSGNDLKLKHSGEAAVRTLSELNGRATGEHPLNTVDSLHIKNELRHPAMTLSRDFSGDGETISSSHNTNIHISPTNLSQNVEGPCLRPETKENASVTILTAKKESNADTGVSDSKLMPRAYSLDDDQKVDHMKEEIIEDEKMLVSKPVTNVESENESGEKQPELTSGVDNENQISLEKATGTGILAQKASPIAENCESAYLKKESPASGNALIVPKDESADDMKSVVIEPEVRPMDQDSSAPEDSYECAEVNTGKKETIGPCSGSSVQPDLQGVSRTESEVSKSCEQKLDANLSEVSGERHACSAAGADAAVKLDFDLNEGFPVDDVSQGEIARQDDPITSSAVHVPCPLPFPISSISGGFHPSITVASAAKGPVIPPENPLRIKGELGWKGSAATSAFRPAEPRKNAEMQSSTNDISSVDVTSIKQNRAPLDFDLNVADERCFEDVGSHGSLDSGPHDRSLGLDLDLNRVDETPEIGTFSITKLDIPVLPSKPSLSSGLSNGGSVSRDFDLNNGPGLEEVGSEVPTRSQQQMKNSVPFPSAVHSTRTNNAEYGNYSAWFPPGNSYSAITVSPLLSGRGEQSYVTGAGAQRIMGPTGSTPFGPEIYRGSVLSSSPAVAYPSTTAFPYPGFPFETNFPLSSNSFSGSTAFMDSSNVGGLCFPTMPTQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVADTERRDERLPSGLRQMSVPNPQASIEDHLKMFQMAGAAALKRKEPDGGWDAERFGYKQHSRQ 1579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5306g00002 1579 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 696 734 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 218 249 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 1297 1346 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 701 720 - -
Vium5306g00002 1579 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 309 417 IPR035441 -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 783 803 - -
Vium5306g00002 1579 SMART BAH_4 40 155 IPR001025 GO:0003682
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 1327 1346 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 1198 1218 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 1297 1312 - -
Vium5306g00002 1579 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1579 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 952 973 - -
Vium5306g00002 1579 ProSiteProfiles TFIIS N-terminal domain profile. 321 406 IPR017923 -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 1501 1526 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 432 492 - -
Vium5306g00002 1579 Pfam BAH domain 42 147 IPR001025 GO:0003682
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 178 252 - -
Vium5306g00002 1579 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 272 407 IPR035441 -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 510 569 - -
Vium5306g00002 1579 CDD TFIIS_I 329 404 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 1560 1579 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 409 424 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 611 656 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 1558 1579 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 190 217 - -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 508 666 - -
Vium5306g00002 1579 SMART TFS2_5 327 405 IPR003617 GO:0005634
Vium5306g00002 1579 Gene3D - 24 253 IPR043151 -
Vium5306g00002 1579 MobiDBLite consensus disorder prediction 406 492 - -
Vium5306g00002 1579 Pfam TFIIS helical bundle-like domain 354 403 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5306g00002 Vium-Chr5306 56513 63416 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vium5306g00002 BAH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5306g00002 - - gmx:112998769 2496.08