Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium52g00001 ATGACGAGTGGTTTTGGGGAATCAACGAGAGCGTCTGCTCCGAGCCCGTCATGCTCGGGTAACAGTTCTAACGATGCTGGTGATTTCGAGTGCAACATATGCTTCGATTTGGCGCAAGAGCCCGTGATCACACTCTGTGGTCACCTATTCTGTTGGCCATGCCTTTATAGGTGGCTCCATCATCATTCCCATTCTCAGGAGTGCCCTGTTTGCAAGGCCCTTGTGCAGGAGGAGAAATTGGTGCCTCTTTATGGAAGGGGCAAAACACAGACTGATCCCAGGACCAAATCATATCCTGGAATGGAGATCCCTCACCGTCCTTCGGGGCAGAGGCCGCAAACTGCGCCGCCCCCACCTCCTCCTGAGAATAACCCTTTTGGGAGTTATGGGTTTGGACTCATGGGAGGGTTCATTCCCATGGCAACTGCCAGATTTGGGAACTTCACACTTTCCACCGCCTTTGCTGGGTTTATCCCATCACTGCTCAACATTCATTTCCATGGCTTTCAGGATGCCACTGTCTATGGGACAACTTCTGGTTATCCCTTTGGGTTTAATAGCTTTCACGGAGGGGGCGCGCGGGGGTATCATCAGGCAACTGGGGGCCAAGTGCAGCGGCAGGAAGACAACGTTTTGAAGAATCTGCTTATGTTGATTGGGTTTCTTGTCCTCCTTACTGTTATTTTTGTGTGGTAA 696 0.5129 MTSGFGESTRASAPSPSCSGNSSNDAGDFECNICFDLAQEPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPSGQRPQTAPPPPPPENNPFGSYGFGLMGGFIPMATARFGNFTLSTAFAGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNSFHGGGARGYHQATGGQVQRQEDNVLKNLLMLIGFLVLLTVIFVW 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium52g00001 231 SMART ring_2 31 71 IPR001841 -
Vium52g00001 231 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Vium52g00001 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Vium52g00001 231 MobiDBLite consensus disorder prediction 1 20 - -
Vium52g00001 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vium52g00001 231 SUPERFAMILY RING/U-box 27 84 - -
Vium52g00001 231 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 14 85 - -
Vium52g00001 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Vium52g00001 231 MobiDBLite consensus disorder prediction 110 125 - -
Vium52g00001 231 MobiDBLite consensus disorder prediction 84 125 - -
Vium52g00001 231 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Vium52g00001 231 CDD RING-HC_AtRMA-like 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium52g00001 Vium-Chr52 5659 7022 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium52g00001 21 229 C3H Transcription Factor Family AT2G23780 62.500 7.86e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium52g00001 K10666 - gmx:100814783 434.491