Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium529g00004 ATGGACTCCAACACTATCGTTTCATGGCCCAGGATGTCAGAAAACATTGAGGGTTTTGCTCTCTCACCCAACAAATCCGAAGAGGTTCATGTTTTAGCAGTTGATGACAGCCTCGTTGATCGCAAAGTCATCGAACGCTTGCTCAAAGTCTTAGCTTGCAAAGTTACTGCTGTGGATAGTGGGCTGAGAGCACTGCAATTGCTTGGACTATTGGACGAGCAGAAAATTCCCTCCGAAACTAATGGTTTTGCTGGTTTAAAGGTGGATCTAATTATCACAGACTACTGCATGCCTGGAATGACAGGTTATGAGTTACTGAAGAAAATCAAGGAATCGTCCACTTTCAAGGAAACTCCAGTGGTGATTATGTCCTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAAGAGGGTGCAGAGGATTTCATAGTTAAGCCAGTGAAGTTATCTGACGTTAAGCGTTTGAAGGATTACATGACAACAAAGGAGGCTAAGGTTGAAGGCCAAGACAGGGAAGGGATCCTCAAAAGGAAGCTCTCAGACACTTCTGAAATGTCATCATCATCACCACCGTCTATTTCCTCATCATCTTCACCCTCAGTGATTCACTCTCCCATCAGACGGCTTAAAATGACCAGCACTGATTGA 651 0.4424 MDSNTIVSWPRMSENIEGFALSPNKSEEVHVLAVDDSLVDRKVIERLLKVLACKVTAVDSGLRALQLLGLLDEQKIPSETNGFAGLKVDLIITDYCMPGMTGYELLKKIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEAKVEGQDREGILKRKLSDTSEMSSSSPPSISSSSSPSVIHSPIRRLKMTSTD 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium529g00004 216 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 187 IPR045279 GO:0009736
Vium529g00004 216 MobiDBLite consensus disorder prediction 167 216 - -
Vium529g00004 216 Pfam Response regulator receiver domain 31 153 IPR001789 GO:0000160
Vium529g00004 216 CDD REC_typeA_ARR 31 156 - -
Vium529g00004 216 SMART REC_2 29 160 IPR001789 GO:0000160
Vium529g00004 216 ProSiteProfiles Response regulatory domain profile. 30 161 IPR001789 GO:0000160
Vium529g00004 216 SUPERFAMILY CheY-like 29 156 IPR011006 -
Vium529g00004 216 Gene3D - 29 197 - -
Vium529g00004 216 MobiDBLite consensus disorder prediction 181 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium529g00004 Vium-Chr529 45743 47136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium529g00004 23 207 Response Regulator Gene Family AT1G59940 64.324 5.81e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium529g00004 Response_reg 1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium529g00004 K14492 - gmx:100527828 322.398