Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium529g00003 ATGGACTCCAACACTATCGTTTCATGGCCCAGGATGTCAGAAAACATTGAGGGTTTTGCTCTCTCACCCAACAAATCCGAAGAGGTTCATGTTTTAGCAGTTGATGACAGCCTCGTTGATCGCAAAGTCATCGAACGCTTGCTCAAAGTCTTAGCTTGCAAAGTTACTGCTGTGGATAGTGGGCTGAGAGCACTGCAATTGCTTGGACTATTGGACGAGCAGAAAATTCCCTCCGAAACTAATGGTTTTGCTCAGGGTTTAAAGGTGGATCTAATTATCACAGACTACTGCATGCCTGGAATGACAGGTTATGAGTTACTGAAGAAAATCAAGGAATCGTCCACTTTCAAGGAAACTCCAGTGGTGATTATGTCCTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAAGAGGGTGCAGAGGATTTCATAGTTAAGCCAGTGAAGTTATCTGACGTTAAGCGTTTGAAGGATTACATGACAACAAAGGAGGCTAAGGTTGAAGGCCAAGACAGGGAAGGGATCCTCAAAAGGAAGCTCTCAGACACTTCTGAAATGTCATCATCATCACCACCGTCTATTTCCTCATCATCTTCACCCTCAGTGATTCACTCTCCCATCAGACGGCTTAAAATGACCAGCACTGATTGA 654 0.4434 MDSNTIVSWPRMSENIEGFALSPNKSEEVHVLAVDDSLVDRKVIERLLKVLACKVTAVDSGLRALQLLGLLDEQKIPSETNGFAQGLKVDLIITDYCMPGMTGYELLKKIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEAKVEGQDREGILKRKLSDTSEMSSSSPPSISSSSSPSVIHSPIRRLKMTSTD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium529g00003 217 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 188 IPR045279 GO:0009736
Vium529g00003 217 ProSiteProfiles Response regulatory domain profile. 30 162 IPR001789 GO:0000160
Vium529g00003 217 MobiDBLite consensus disorder prediction 182 217 - -
Vium529g00003 217 MobiDBLite consensus disorder prediction 168 217 - -
Vium529g00003 217 SUPERFAMILY CheY-like 29 157 IPR011006 -
Vium529g00003 217 Gene3D - 29 198 - -
Vium529g00003 217 SMART REC_2 29 161 IPR001789 GO:0000160
Vium529g00003 217 CDD REC_typeA_ARR 31 157 - -
Vium529g00003 217 Pfam Response regulator receiver domain 31 154 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium529g00003 Vium-Chr529 45743 47137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium529g00003 23 208 Response Regulator Gene Family AT1G59940 63.441 4.02e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium529g00003 Response_reg 1.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium529g00003 K14492 - gmx:100527828 317.775