Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium529g00001 ATGTTAGAATTTCTCTTCCTTAGCTTCCTCACCTTTGCAACTACTCACGCAGCTCTTCCCAATCCACATGGAAGTCCACGGCCAGATAGTTCTTCATCACCACTAATTGCAACAACCCTCCATGACTATGTATACCTAAATTGCTCCACTGACACAGATGCGGGCAGTGCCTTCCAATTCAACCTAGACACGCTCCTACGGAGATTATCTAATGCTACAACTGACAACGGCTTCAACAAAACCACAGTCACTGGAGAAAACCCCTCAGACTCAGTCTTTGGATTGTTCATGTGTAGGGCTGACGTTCCCTCTCAGCTTTGTCGACAATGCGTCAACAAAGCAGCCCAACAGTTAGCCCTAGACTGTTCCTACTCCCAACAAGCTCTCATTTGGTACGATGACTGCATGCTTCGTTATTCCAACTACTCGTTCTTCTCTACCCTCGACACAAGGCCTAAGTTTACCGTAACCAGCATCCTCAACATCTCTAACGAGGAAAGCTTCAGGCGTTTATTGTTTCGGACCATGAACAAAACTGCAGACGAAGCAGCTTATCCGCTTCATCCTATCAGTGCCAAGAAGTTTGCCACAAGGCAAGCAAGCGTGTCTGGATTTCAGAGGCTTTATTGTATGGCGCAGTGCACTCCAGACTTGTTATCCAATGATTGCAGCAGCTGTCTGGAGGGAGCCATAGGGGACCTTCCATGGTGCTGTGGAGGGAGACAAGGAGGGAGAGTTTTATATCCCAGTTGTTTTGTTAGGTATGAATTGTACCCTTTTTATCGCCACATTGATCCCTCAGCGCCACCTTCGCATCCCCCACGGCCGGTTCCTGTTCCTGCGTCAAAATTTTCAGACGCAGATCCAAATTATCTTTACCACAATTGCTCAGCTGATGCCACTGCTGACAGCGATTTCAACAACGACCTCGTTACCCTCCTCTCTTACTTGTCTTCCAATGCCACCAAATCATACTACAAGGACAGTGTCGACGACAATGCGTATGGCCTATTCATGTGCCGTGGCGACCTTCCCTCTCAACTCTGTCAATGCATCCTAAACGCAACCAGTTATTTATCTTCAAGCTGCAATTCTTCTCAAGAGGCTATAATTTGGTTCAGCCACTGCATGCTACGCTATTCCAACAACTATTTTTTCTCCCACATGGAAAAAAGTCCAATGTTTCAAATGTTGAATGTTACCGCTACCTCCAGCCCCATCCCTGGCCAAGACGACTTCACTTACTCATTATCAACTACTTTAGCTAGTCTGGCAAAGGCAGCAGGAGATAGTGCAGAGAAATATGTGGATAAATCAATAGCATTGAATGATGCACAGACCCTTTACACTCTTGGTCAGTGTACGCAGGATTTGTCCAGTGACGACTGTGTGGGCTGTCTCTCAGACATAAATGGAAGAATTCCATGGTCAAACTTGGGGAGCGTTGGGGGAAGAATTCTATATCCAAGCTGCAATATCAGGTTTGAATTATTCCAATTTTACAGAGCTGGTGGTGACCCAGCTCAAGGGCCTCCACCATCACCTCTTCAAGAAAGGAAAAAAGGGCAATCTCGTACAATGATTTTTGTTATTGTACCGACGATTATTTCGCTGACACTACTCTCTTTAGTCTACTATTTGATAAACTACTATTTGATGAAGAGAAAAAGAAGAAAAAATGTTAAGAGGATTCTCAGAGAACAATTTGGTCACGAAAGTGTAGCTTTAGAGCCATTACAATTCAAGTTATCTGTAATTGAGGCCGCGACCAACAACTTTTCGCAGGAGAATAAAATTGGTAGAGGTGGATTTGGAGAAGTTTATAAGGGTGTTCTTGATGGAAGACAAATAGCGGTAAAACGACTTTCAATAAGCTCTAGCCAAGGAGAAAATGAGTTCAAGAATGAAGTTTTATCGATAGCTAAACTTCAACACAGAAATCTTGTGAGATTTATTGGCTTTTGTCTTGAAGAACAAGATAAAATACTAATTTATGAATATGTTCCAAACAAGAGTCTTGATTACTTTTTATTTGATACTCAAAGATCGAAGTCGTTAGGTTGGTATGAACGTTACAATATTATAGTGGGCATTGCTCGTGGAATTCTTTATTTACATGAACATTCTAGACTCAAAGTCATACATCGAGATCTTAAGCCTAGTAACATTTTATTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGTTTGGCTAGAATTGTTGAAATAAATCAAGATCAAGGGAGTACACTCAATGTTGCCGGAACGTATGGTTATATGTCTCCAGAATATTTAATTCTTGGACGATTTTCTGAAAAATCAGATGTTTTTAGTTTTGGAGTAATGGTTCTAGAGATCATTACCGGAAAAAAAAATGCAAGTTCATATGAATCCAATCGAATTGCTTATAACCTCTTGAGTTATGTTTGGAGGCAATGGAAGGATCATGCAACACTTGGTATATTAGACCCAAGTATTAAAGAAAATTTTTCCGAAATTGAAGTGAATAGATGCATTCAAATTGGTTTACTAAGTGTTCAACCAAATCCCAATGCTAGACCAACAATGGCAGAAATTGTTTCATATATTAGTAGTTATTTAATTCAGTTGCCAAGTCCACGAGAACCTGCATTTGGTAGACTAGATCGACCAGGAGTTTTACAAGAATCGAGTTCTAGTCAGTTTACAAATGATTCCACTCCATTCTCTATTAATGAAATGTCTATGAGTGAATTTCTTCCTCGATAA 2751 0.4093 MLEFLFLSFLTFATTHAALPNPHGSPRPDSSSSPLIATTLHDYVYLNCSTDTDAGSAFQFNLDTLLRRLSNATTDNGFNKTTVTGENPSDSVFGLFMCRADVPSQLCRQCVNKAAQQLALDCSYSQQALIWYDDCMLRYSNYSFFSTLDTRPKFTVTSILNISNEESFRRLLFRTMNKTADEAAYPLHPISAKKFATRQASVSGFQRLYCMAQCTPDLLSNDCSSCLEGAIGDLPWCCGGRQGGRVLYPSCFVRYELYPFYRHIDPSAPPSHPPRPVPVPASKFSDADPNYLYHNCSADATADSDFNNDLVTLLSYLSSNATKSYYKDSVDDNAYGLFMCRGDLPSQLCQCILNATSYLSSSCNSSQEAIIWFSHCMLRYSNNYFFSHMEKSPMFQMLNVTATSSPIPGQDDFTYSLSTTLASLAKAAGDSAEKYVDKSIALNDAQTLYTLGQCTQDLSSDDCVGCLSDINGRIPWSNLGSVGGRILYPSCNIRFELFQFYRAGGDPAQGPPPSPLQERKKGQSRTMIFVIVPTIISLTLLSLVYYLINYYLMKRKRRKNVKRILREQFGHESVALEPLQFKLSVIEAATNNFSQENKIGRGGFGEVYKGVLDGRQIAVKRLSISSSQGENEFKNEVLSIAKLQHRNLVRFIGFCLEEQDKILIYEYVPNKSLDYFLFDTQRSKSLGWYERYNIIVGIARGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVEINQDQGSTLNVAGTYGYMSPEYLILGRFSEKSDVFSFGVMVLEIITGKKNASSYESNRIAYNLLSYVWRQWKDHATLGILDPSIKENFSEIEVNRCIQIGLLSVQPNPNARPTMAEIVSYISSYLIQLPSPREPAFGRLDRPGVLQESSSSQFTNDSTPFSINEMSMSEFLPR 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium529g00001 916 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 554 667 - -
Vium529g00001 916 Pfam Salt stress response/antifungal 163 258 IPR002902 -
Vium529g00001 916 Pfam Salt stress response/antifungal 410 496 IPR002902 -
Vium529g00001 916 Pfam Salt stress response/antifungal 296 382 IPR002902 -
Vium529g00001 916 Pfam Salt stress response/antifungal 48 142 IPR002902 -
Vium529g00001 916 Gene3D Phosphorylase Kinase; domain 1 553 667 - -
Vium529g00001 916 ProSiteProfiles Gnk2-homologous domain profile. 288 385 IPR002902 -
Vium529g00001 916 FunFam Cysteine-rich receptor-like protein kinase 25 152 260 - -
Vium529g00001 916 ProSiteProfiles Gnk2-homologous domain profile. 40 144 IPR002902 -
Vium529g00001 916 Gene3D - 41 144 IPR038408 -
Vium529g00001 916 Gene3D - 153 260 IPR038408 -
Vium529g00001 916 Gene3D - 288 385 IPR038408 -
Vium529g00001 916 Gene3D - 395 500 IPR038408 -
Vium529g00001 916 ProSitePatterns Protein kinases ATP-binding region signature. 599 620 IPR017441 GO:0005524
Vium529g00001 916 Pfam Protein kinase domain 594 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium529g00001 916 SMART serkin_6 593 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium529g00001 916 ProSiteProfiles Gnk2-homologous domain profile. 150 260 IPR002902 -
Vium529g00001 916 Gene3D Transferase(Phosphotransferase) domain 1 668 871 - -
Vium529g00001 916 SUPERFAMILY Protein kinase-like (PK-like) 577 897 IPR011009 -
Vium529g00001 916 ProSiteProfiles Gnk2-homologous domain profile. 395 500 IPR002902 -
Vium529g00001 916 FunFam cysteine-rich receptor-like protein kinase 10 668 871 - -
Vium529g00001 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 713 725 IPR008271 GO:0004672|GO:0006468
Vium529g00001 916 ProSiteProfiles Protein kinase domain profile. 593 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium529g00001 916 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 278 912 - -
Vium529g00001 916 FunFam Cysteine-rich receptor-like protein kinase 25 393 500 - -
Vium529g00001 916 CDD STKc_IRAK 599 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium529g00001 Vium-Chr529 10071 14618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium529g00001 283 916 Receptor kinase-like Gene Family AT4G05200 41.916 3.57e-168 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium529g00001 Pkinase 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium529g00001 - - vum:124844867 1165.98